Back to the "Multiple platform build/check report"

Package 74/77HostnameOS / ArchBUILDCHECKBUILD BIN
yeastCC 1.2.11
Sandrine Dudoit
Snapshot Date: 2010-04-02 12:27:31 -0700 (Fri, 02 Apr 2010)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/yeastCC
Last Changed Rev: 1040 / Revision: 1201
Last Changed Date: 2009-10-12 14:01:00 -0700 (Mon, 12 Oct 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK [ WARNINGS ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 
Package: yeastCC
Version: 1.2.11
Command: /home/biocbuild/bbs-2.5-bioc/R/bin/R CMD check --no-vignettes yeastCC_1.2.11.tar.gz
StartedAt: 2010-04-02 14:19:12 -0700 (Fri, 02 Apr 2010)
EndedAt: 2010-04-02 14:19:37 -0700 (Fri, 02 Apr 2010)
EllapsedTime: 25.5 seconds
RetCode: 0
Status: WARNINGS
CheckDir: yeastCC.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.5-data-experiment/meat/yeastCC.Rcheck'
* using R version 2.10.1 (2009-12-14)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'yeastCC/DESCRIPTION' ... OK
* this is package 'yeastCC' version '1.2.11'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'yeastCC' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  breeden
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  /loc/home/biocbuild/bbs-2.5-data-experiment/meat/yeastCC.Rcheck/00check.log
for details

yeastCC.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘yeastCC’ ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
* DONE (yeastCC)