Back to the "Multiple platform build/check report" A  B  C  D  E [F] G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 113/353HostnameOS / ArchBUILDCHECKBUILD BIN
flowClust 2.4.0
Raphael Gottardo
Snapshot Date: 2010-04-02 23:28:25 -0700 (Fri, 02 Apr 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/flowClust
Last Changed Rev: 42684 / Revision: 45705
Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 
Package: flowClust
Version: 2.4.0
Command: E:\biocbld\bbs-2.5-bioc\R\bin\R.exe CMD check --no-vignettes flowClust_2.4.0.tar.gz
StartedAt: 2010-04-03 04:38:04 -0700 (Sat, 03 Apr 2010)
EndedAt: 2010-04-03 04:39:37 -0700 (Sat, 03 Apr 2010)
EllapsedTime: 92.1 seconds
RetCode: 0
Status: OK
CheckDir: flowClust.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.5-bioc/meat/flowClust.Rcheck'
* using R version 2.10.1 (2009-12-14)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowClust/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowClust' version '2.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowClust' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

flowClust.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'flowClust' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"     -Ie:/biocbld/bbs-2.5-bioc/R/src/include -IC:/gsl/include   -O3 -Wall  -std=gnu99 -c BoxCox.c -o BoxCox.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"     -Ie:/biocbld/bbs-2.5-bioc/R/src/include -IC:/gsl/include   -O3 -Wall  -std=gnu99 -c Nu.c -o Nu.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"     -Ie:/biocbld/bbs-2.5-bioc/R/src/include -IC:/gsl/include   -O3 -Wall  -std=gnu99 -c flowClust.c -o flowClust.o
flowClust.c: In function 'flowClust':
flowClust.c:49: warning: 's' may be used uninitialized in this function
flowClust.c:49: warning: 's2' may be used uninitialized in this function
flowClust.c:51: warning: 's3' may be used uninitialized in this function
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"     -Ie:/biocbld/bbs-2.5-bioc/R/src/include -IC:/gsl/include   -O3 -Wall  -std=gnu99 -c flowClustGaussian.c -o flowClustGaussian.o
flowClustGaussian.c: In function 'flowClustGaussian':
flowClustGaussian.c:34: warning: 's' may be used uninitialized in this function
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"     -Ie:/biocbld/bbs-2.5-bioc/R/src/include -IC:/gsl/include   -O3 -Wall  -std=gnu99 -c ranMVNT.c -o ranMVNT.o
gcc -shared -s -o flowClust.dll tmp.def BoxCox.o Nu.o flowClust.o flowClustGaussian.o ranMVNT.o -LC:/gsl/bin -lgsl -lgslcblas -lm -Le:/biocbld/bbs-2.5-bioc/R/bin -lR
Info: resolving _gsl_root_fsolver_brent by linking to __imp__gsl_root_fsolver_brent (auto-import)
Info: resolving _gsl_min_fminimizer_brent by linking to __imp__gsl_min_fminimizer_brent (auto-importc:/rtools/mingw/bin/../lib/gcc/mingw32/4.2.1-sjlj/../../../../mingw32/bin/ld.exe: warning: auto-importing has been activated without --enable-auto-import specified on the command line.
This should work unless it involves constant data structures referencing symbols from auto-imported DLLs.)

  ... done
** R
** data
** inst
** preparing package for lazy loading

by using mclust, invoked on its own or through another package,
you accept the license agreement in the mclust LICENSE file
and at http://www.stat.washington.edu/mclust/license.txt


Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)

Attaching package: 'flowCore'


	The following object(s) are masked from package:stats :

	 alias,
	 filter 

Warning in .findOrCopyClass(class2, classDef2, where, "subclass") :
  Class "Ulist" is defined (with package slot "rrcov") but no metadata object found to revise subclass information---not exported?  Making a copy in package "flowClust"
Warning in .findOrCopyClass(class2, classDef2, where, "subclass") :
  Class "Uvector" is defined (with package slot "rrcov") but no metadata object found to revise subclass information---not exported?  Making a copy in package "flowClust"
** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (flowClust)