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Package 302/353HostnameOS / ArchBUILDCHECKBUILD BIN
RWebServices 1.10.1
Martin Morgan
Snapshot Date: 2010-04-02 23:28:25 -0700 (Fri, 02 Apr 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/RWebServices
Last Changed Rev: 44978 / Revision: 45705
Last Changed Date: 2010-03-02 07:55:13 -0800 (Tue, 02 Mar 2010)
wilson2 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64 N O T   S U P P O R T E D
pitt Mac OS X Tiger (10.4.11) / i386 N O T   S U P P O R T E D
pelham Mac OS X Leopard (10.5.8) / i386 N O T   S U P P O R T E D
Package: RWebServices
Version: 1.10.1
Command: /home/biocbuild/bbs-2.5-bioc/R/bin/R CMD check --no-vignettes RWebServices_1.10.1.tar.gz
StartedAt: 2010-04-03 06:52:25 -0700 (Sat, 03 Apr 2010)
EndedAt: 2010-04-03 06:52:54 -0700 (Sat, 03 Apr 2010)
EllapsedTime: 28.5 seconds
RetCode: 0
Status: OK
CheckDir: RWebServices.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.5-bioc/meat/RWebServices.Rcheck'
* using R version 2.10.1 (2009-12-14)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'RWebServices/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RWebServices' version '1.10.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RWebServices' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

RWebServices.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘RWebServices’ ...

Guessing SJava home: /loc/home/biocbuild/bbs-2.5-bioc/meat/RWebServices.Rcheck/SJava

checking Java support in R... configure: creating ./config.status
config.status: creating inst/scripts/RWebServicesEnv.properties
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.5-bioc/R/include -I/usr/lib64/jvm/java/include -I/usr/lib64/jvm/java/include/linux -I/usr/local/include    -fpic  -g -O2 -Wall -c RWebServicesConverters.c -o RWebServicesConverters.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.5-bioc/R/include -I/usr/lib64/jvm/java/include -I/usr/lib64/jvm/java/include/linux -I/usr/local/include    -fpic  -g -O2 -Wall -c init.c -o init.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o RWebServices.so RWebServicesConverters.o init.o -L/usr/lib64/jvm/java-1.6.0-sun-1.6.0/jre/lib/amd64/server -L/usr/lib64/jvm/java-1.6.0-sun-1.6.0/jre/lib/amd64 -L/usr/lib64/jvm/java-1.6.0-sun-1.6.0/jre/../lib/amd64 -L/usr/local/lib64 -L/usr/local/lib/root -L/usr/local/root/lib -L/usr/java/packages/lib/amd64 -L/lib -L/usr/lib -ljvm -L/home/biocbuild/bbs-2.5-bioc/R/lib -lR
/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
* DONE (RWebServices)