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Package 131/353HostnameOS / ArchBUILDCHECKBUILD BIN
GeneR 2.16.0
Y. d'Aubenton-Carafa
Snapshot Date: 2010-04-02 23:28:25 -0700 (Fri, 02 Apr 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/GeneR
Last Changed Rev: 42684 / Revision: 45705
Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: GeneR
Version: 2.16.0
Command: E:\biocbld\bbs-2.5-bioc\R\bin\R.exe CMD build GeneR
StartedAt: 2010-04-03 01:36:52 -0700 (Sat, 03 Apr 2010)
EndedAt: 2010-04-03 01:37:15 -0700 (Sat, 03 Apr 2010)
EllapsedTime: 22.5 seconds
RetCode: 0
Status: OK
PackageFile: GeneR_2.16.0.tar.gz
PackageFileSize: 232.6 KiB

Command output

* checking for file 'GeneR/DESCRIPTION' ... OK
* preparing 'GeneR':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* installing *source* package 'GeneR' ...
** libs
  making DLL ...
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c GeneR_glob.cc -o GeneR_glob.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c GeneR_seq.cc -o GeneR_seq.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c complementaire.cc -o complementaire.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c compoSeq.cc -o compoSeq.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c dnaRna.cc -o dnaRna.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c libIndex.cc -o libIndex.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c libStrings.cc -o libStrings.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c makeIndex.cc -o makeIndex.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c masked.cc -o masked.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c misc.cc -o misc.o
misc.cc: In function 'SEXPREC* str_to_nbstr(SEXPREC*, SEXPREC*)':
misc.cc:31: warning: 'multiple' may be used uninitialized in this function
misc.cc:30: warning: 'ans' may be used uninitialized in this function
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c readEmblDescript.cc -o readEmblDescript.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c readIndex.cc -o readIndex.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c readLocation.cc -o readLocation.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c readSeqEmbl.cc -o readSeqEmbl.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c readSeqFasta.cc -o readSeqFasta.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c readSeqGbk.cc -o readSeqGbk.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c seqManip.cc -o seqManip.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c strcasestr.c -o strcasestr.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c translate.cc -o translate.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c upperSeq.cc -o upperSeq.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c vecteurs.cc -o vecteurs.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O2 -Wall  -c writeFasta.cc -o writeFasta.o
g++ -shared -s -o GeneR.dll tmp.def GeneR_glob.o GeneR_seq.o complementaire.o compoSeq.o dnaRna.o libIndex.o libStrings.o makeIndex.o masked.o misc.o readEmblDescript.o readIndex.o readLocation.o readSeqEmbl.o readSeqFasta.o readSeqGbk.o seqManip.o strcasestr.o translate.o upperSeq.o vecteurs.o writeFasta.o -Le:/biocbld/bbs-2.5-bioc/R/bin -lR
  ... done
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (GeneR)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'GeneR_2.16.0.tar.gz'