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Package 150/353HostnameOS / ArchBUILDCHECKBUILD BIN
GLAD 2.6.0
Philippe Hupe
Snapshot Date: 2010-04-02 23:28:25 -0700 (Fri, 02 Apr 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/GLAD
Last Changed Rev: 42684 / Revision: 45705
Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009)
wilson2 Linux (openSUSE 11.1) / x86_64 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: GLAD
Version: 2.6.0
Command: /home/biocbuild/bbs-2.5-bioc/R/bin/R CMD build GLAD
StartedAt: 2010-04-03 01:15:05 -0700 (Sat, 03 Apr 2010)
EndedAt: 2010-04-03 01:15:19 -0700 (Sat, 03 Apr 2010)
EllapsedTime: 13.5 seconds
RetCode: 0
Status: OK
PackageFile: GLAD_2.6.0.tar.gz
PackageFileSize: 1.237 MiB

Command output

* checking for file 'GLAD/DESCRIPTION' ... OK
* preparing 'GLAD':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running cleanup
* installing the package to re-build vignettes
* installing *source* package ‘GLAD’ ...
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
GSL has been found on the operating system
operating system: Linux
configure: creating ./config.status
config.status: creating src/Makevars

src/Makevars file

PKG_LIBS = -lgsl -lgslcblas -lm  
PKG_CPPFLAGS += 

** libs
g++ -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c BkpInfo.cpp -o BkpInfo.o
g++ -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c HaarSeg.cpp -o HaarSeg.o
g++ -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c MoveBkp.cpp -o MoveBkp.o
g++ -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c OutliersGNL.cpp -o OutliersGNL.o
g++ -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c chrBreakpoints.cpp -o chrBreakpoints.o
g++ -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c cutree.cpp -o cutree.o
g++ -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c daglad.cpp -o daglad.o
g++ -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c distance.cpp -o distance.o
g++ -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c filterBkp.cpp -o filterBkp.o
g++ -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c findCluster.cpp -o findCluster.o
g++ -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c glad-utils.cpp -o glad-utils.o
g++ -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c hclust.cpp -o hclust.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c laws.c -o laws.o
g++ -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c loopRemove.cpp -o loopRemove.o
g++ -shared -L/usr/local/lib64 -o GLAD.so BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -lgsl -lgslcblas -lm -L/home/biocbuild/bbs-2.5-bioc/R/lib -lR
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
* DONE (GLAD)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* running cleanup
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'GLAD_2.6.0.tar.gz'