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Package 96/353HostnameOS / ArchBUILDCHECKBUILD BIN
DNAcopy 1.20.0
Venkatraman E. Seshan
Snapshot Date: 2010-04-02 23:28:25 -0700 (Fri, 02 Apr 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/DNAcopy
Last Changed Rev: 42684 / Revision: 45705
Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009)
wilson2 Linux (openSUSE 11.1) / x86_64 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: DNAcopy
Version: 1.20.0
Command: /home/biocbuild/bbs-2.5-bioc/R/bin/R CMD build DNAcopy
StartedAt: 2010-04-03 01:06:16 -0700 (Sat, 03 Apr 2010)
EndedAt: 2010-04-03 01:06:21 -0700 (Sat, 03 Apr 2010)
EllapsedTime: 5.5 seconds
RetCode: 0
Status: OK
PackageFile: DNAcopy_1.20.0.tar.gz
PackageFileSize: 253.2 KiB

Command output

* checking for file 'DNAcopy/DESCRIPTION' ... OK
* preparing 'DNAcopy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* installing *source* package ‘DNAcopy’ ...
** libs
gfortran   -fpic  -g -O -Wall -c cbsWtstats.f -o cbsWtstats.o
cbsWtstats.f: In function ‘wtmaxo’:
cbsWtstats.f:17: warning: ‘tmaxj’ may be used uninitialized in this function
cbsWtstats.f:17: warning: ‘tmaxi’ may be used uninitialized in this function
gfortran   -fpic  -g -O -Wall -c cbststats.f -o cbststats.o
cbststats.f: In function ‘tmaxo’:
cbststats.f:11: warning: ‘sxmxi’ may be used uninitialized in this function
gfortran   -fpic  -g -O -Wall -c changepoints-wtd.f -o changepoints-wtd.o
gfortran   -fpic  -g -O -Wall -c changepoints.f -o changepoints.o
gfortran   -fpic  -g -O -Wall -c esegment.f -o esegment.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran   -fpic  -g -O -Wall -c getbdry.f -o getbdry.o
gfortran   -fpic  -g -O -Wall -c prune.f -o prune.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c rshared.c -o rshared.o
gfortran   -fpic  -g -O -Wall -c segmentp.f -o segmentp.o
gfortran   -fpic  -g -O -Wall -c smoothCNA.f -o smoothCNA.o
gfortran   -fpic  -g -O -Wall -c tailprobs.f -o tailprobs.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -lgfortran -lm -L/home/biocbuild/bbs-2.5-bioc/R/lib -lR
** R
** data
**  moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
* DONE (DNAcopy)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'DNAcopy_1.20.0.tar.gz'