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Package 56/353HostnameOS / ArchBUILDCHECKBUILD BIN
BufferedMatrixMethods 1.10.1
B. M. Bolstad
Snapshot Date: 2010-04-02 23:28:25 -0700 (Fri, 02 Apr 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/BufferedMatrixMethods
Last Changed Rev: 44226 / Revision: 45705
Last Changed Date: 2010-01-25 06:52:15 -0800 (Mon, 25 Jan 2010)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: BufferedMatrixMethods
Version: 1.10.1
Command: E:\biocbld\bbs-2.5-bioc\R\bin\R.exe CMD check --no-vignettes BufferedMatrixMethods_1.10.1.tar.gz
StartedAt: 2010-04-03 04:08:34 -0700 (Sat, 03 Apr 2010)
EndedAt: 2010-04-03 04:09:06 -0700 (Sat, 03 Apr 2010)
EllapsedTime: 31.7 seconds
RetCode: 0
Status: OK
CheckDir: BufferedMatrixMethods.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.5-bioc/meat/BufferedMatrixMethods.Rcheck'
* using R version 2.10.1 (2009-12-14)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BufferedMatrixMethods/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BufferedMatrixMethods' version '1.10.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BufferedMatrixMethods' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK

BufferedMatrixMethods.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'BufferedMatrixMethods' ...
** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"   -I"e:/biocbld/bbs-2.5-bioc/R/library/BufferedMatrix/include"     -O3 -Wall  -std=gnu99 -c init_package.c -o init_package.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"   -I"e:/biocbld/bbs-2.5-bioc/R/library/BufferedMatrix/include"     -O3 -Wall  -std=gnu99 -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function 'bm_rma_bg_correct':
preprocess_bm.c:344: warning: unused variable 'i'
preprocess_bm.c: In function 'R_bm_rma_bg_correct':
preprocess_bm.c:378: warning: unused variable 'current_mode'
preprocess_bm.c: In function 'R_bm_quantile_normalize':
preprocess_bm.c:593: warning: unused variable 'current_mode'
preprocess_bm.c: In function 'R_bm_rma_bg_correct_quantile_normalize':
preprocess_bm.c:1151: warning: unused variable 'current_mode'
preprocess_bm.c: At top level:
preprocess_bm.c:453: warning: 'min' defined but not used
gcc -shared -s -o BufferedMatrixMethods.dll tmp.def init_package.o preprocess_bm.o -Le:/biocbld/bbs-2.5-bioc/R/bin -lR
  ... done
** R
** preparing package for lazy loading

Attaching package: 'BufferedMatrix'


	The following object(s) are masked from package:base :

	 colMeans,
	 colSums,
	 rowMeans,
	 rowSums 

** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (BufferedMatrixMethods)