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Package 86/353HostnameOS / ArchBUILDCHECKBUILD BIN
crlmm 1.4.1
Benilton S Carvalho , Robert Scharpf , Matt Ritchie
Snapshot Date: 2009-12-13 23:30:35 -0800 (Sun, 13 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/crlmm
Last Changed Rev: 42915 / Revision: 43539
Last Changed Date: 2009-11-11 04:41:51 -0800 (Wed, 11 Nov 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: crlmm
Version: 1.4.1
Command: E:\biocbld\bbs-2.5-bioc\R\bin\R.exe CMD INSTALL --build --library=crlmm.buildbin-libdir crlmm_1.4.1.tar.gz
StartedAt: 2009-12-14 07:01:13 -0800 (Mon, 14 Dec 2009)
EndedAt: 2009-12-14 07:01:37 -0800 (Mon, 14 Dec 2009)
EllapsedTime: 23.5 seconds
RetCode: 0
Status: OK
PackageFile: crlmm_1.4.1.zip
PackageFileSize: 2.223 MiB

Command output

* installing *source* package 'crlmm' ...
** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c gtypeCaller.c -o gtypeCaller.o
gcc -I"E:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c gtypeCallerNM.c -o gtypeCallerNM.o
gtypeCallerNM.c: In function 'gtypeCallerPart1nm':
gtypeCallerNM.c:212: warning: implicit declaration of function 'mad_median'
gcc -I"E:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c gtypeCallerNormalNoN.c -o gtypeCallerNormalNoN.o
gcc -I"E:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c gtypeCallerTNoN.c -o gtypeCallerTNoN.o
gcc -I"E:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c init.c -o init.o
gcc -I"E:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c tmp.c -o tmp.o
tmp.c: In function 'test':
tmp.c:17: warning: implicit declaration of function 'genotypeConfidence'
gcc -I"E:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c trimmed.c -o trimmed.o
gcc -I"E:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c utils.c -o utils.o
utils.c: In function 'mad_median':
utils.c:124: warning: unused variable 'n_ignore'
gcc -shared -s -o crlmm.dll tmp.def gtypeCaller.o gtypeCallerNM.o gtypeCallerNormalNoN.o gtypeCallerTNoN.o init.o tmp.o trimmed.o utils.o -LE:/biocbld/bbs-2.5-bioc/R/bin -lR
  ... done
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "ncol" in "crlmm"
Creating a new generic function for "nrow" in "crlmm"
Creating a new generic function for "plot" in "crlmm"
Creating a new generic function for "points" in "crlmm"
Creating a new generic function for "update" in "crlmm"
Creating a new generic function for "boxplot" in "crlmm"
** help
*** installing help indices
** building package indices ...
** MD5 sums
packaged installation of 'crlmm' as crlmm_1.4.1.zip
* DONE (crlmm)