RdbiPgSQL 1.20.0
Jianhua Zhang
| Snapshot Date: 2009-12-13 23:30:35 -0800 (Sun, 13 Dec 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/RdbiPgSQL | | Last Changed Rev: 42684 / Revision: 43539 | | Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | N O T S U P P O R T E D |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.5-bioc/meat/RdbiPgSQL.Rcheck'
* using R version 2.10.0 (2009-10-26)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'RdbiPgSQL/DESCRIPTION' ... OK
* this is package 'RdbiPgSQL' version '1.20.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RdbiPgSQL' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: dbAppendTable.Rd:7-8: Dropping empty section \usage
prepare_Rd: dbAppendTable.Rd:9-10: Dropping empty section \arguments
prepare_Rd: internal.Rd:23-24: Dropping empty section \usage
prepare_Rd: internal.Rd:25-26: Dropping empty section \arguments
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'dbColumnInfo.PgSQL.result':
dbColumnInfo.PgSQL.result
S3 methods shown with full name in documentation object 'dbReadTable.PgSQL.conn':
dbReadTable.PgSQL.conn
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* install options are ' --no-html'
* installing *source* package ‘RdbiPgSQL’ ...
creating cache ./config.cache
checking for PQconnectdb in -lpq... yes
checking how to run the C preprocessor... cc -E
checking for /usr/include/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/include/pgsql/libpq-fe.h... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.5-bioc/R/include -I/usr/include/pgsql -I/usr/local/include -fpic -g -O2 -Wall -c PgSQL.c -o PgSQL.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.5-bioc/R/include -I/usr/include/pgsql -I/usr/local/include -fpic -g -O2 -Wall -c PgSQLInit.c -o PgSQLInit.o
PgSQL.h:9: warning: ‘mkInteger’ defined but not used
PgSQL.h:18: warning: ‘mkLogical’ defined but not used
PgSQL.h:27: warning: ‘mkString_safe’ defined but not used
PgSQL.h:33: warning: ‘fetchPgString’ defined but not used
PgSQL.h:46: warning: ‘fetchPgInteger’ defined but not used
PgSQL.h:66: warning: ‘fetchPgDouble’ defined but not used
PgSQL.h:89: warning: ‘fetchPgLogical’ defined but not used
gcc -std=gnu99 -shared -L/usr/local/lib64 -o RdbiPgSQL.so PgSQL.o PgSQLInit.o -lpq -L/home/biocbuild/bbs-2.5-bioc/R/lib -lR
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
* DONE (RdbiPgSQL)