Biostrings 2.14.8
H. Pages
| Snapshot Date: 2009-12-13 23:30:35 -0800 (Sun, 13 Dec 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/Biostrings | | Last Changed Rev: 43250 / Revision: 43539 | | Last Changed Date: 2009-11-24 22:31:39 -0800 (Tue, 24 Nov 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | [ OK ] |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
INSTALLATION WITH 'R CMD INSTALL --preclean --library=Biostrings.buildbin-libdir Biostrings_2.14.8.tar.gz'
* installing *source* package ‘Biostrings’ ...
** libs
** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c BAB_class.c -o BAB_class.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c BitMatrix.c -o BitMatrix.o
BitMatrix.c: In function ‘debug_BitMatrix’:
BitMatrix.c:382: warning: left shift count >= width of type
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c MIndex_class.c -o MIndex_class.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c PreprocessedTB_class.c -o PreprocessedTB_class.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c R_init_Biostrings.c -o R_init_Biostrings.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c RoSeqs_utils.c -o RoSeqs_utils.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c SparseList_utils.c -o SparseList_utils.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c XStringSet_class.c -o XStringSet_class.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c XStringSet_io.c -o XStringSet_io.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c XString_class.c -o XString_class.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c align_needwunsQS.c -o align_needwunsQS.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c align_pairwiseAlignment.c -o align_pairwiseAlignment.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c align_utils.c -o align_utils.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c extract_transcripts.c -o extract_transcripts.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c find_palindromes.c -o find_palindromes.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c gtestsim.c -o gtestsim.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c inject_code.c -o inject_code.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c letter_frequency.c -o letter_frequency.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c lowlevel_matching.c -o lowlevel_matching.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_BOC.c -o match_BOC.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_BOC2.c -o match_BOC2.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_PWM.c -o match_PWM.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_WCP.c -o match_WCP.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_pattern.c -o match_pattern.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_pattern_boyermoore.c -o match_pattern_boyermoore.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_pattern_indels.c -o match_pattern_indels.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_pattern_shiftor.c -o match_pattern_shiftor.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_pdict.c -o match_pdict.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_pdict_ACtree.c -o match_pdict_ACtree.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_pdict_ACtree2.c -o match_pdict_ACtree2.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_pdict_Twobit.c -o match_pdict_Twobit.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_pdict_utils.c -o match_pdict_utils.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_reporting.c -o match_reporting.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c matchprobes.c -o matchprobes.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c pmatchPattern.c -o pmatchPattern.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c replace_letter_at.c -o replace_letter_at.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c strutils.c -o strutils.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c utils.c -o utils.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c xscat.c -o xscat.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Biostrings.so BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o SparseList_utils.o XStringSet_class.o XStringSet_io.o XString_class.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o extract_transcripts.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_BOC.o match_BOC2.o match_PWM.o match_WCP.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o replace_letter_at.o strutils.o utils.o xscat.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c BAB_class.c -o BAB_class.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c BitMatrix.c -o BitMatrix.o
BitMatrix.c: In function ‘debug_BitMatrix’:
BitMatrix.c:382: warning: left shift count >= width of type
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c MIndex_class.c -o MIndex_class.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c PreprocessedTB_class.c -o PreprocessedTB_class.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c R_init_Biostrings.c -o R_init_Biostrings.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c RoSeqs_utils.c -o RoSeqs_utils.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c SparseList_utils.c -o SparseList_utils.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c XStringSet_class.c -o XStringSet_class.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c XStringSet_io.c -o XStringSet_io.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c XString_class.c -o XString_class.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c align_needwunsQS.c -o align_needwunsQS.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c align_pairwiseAlignment.c -o align_pairwiseAlignment.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c align_utils.c -o align_utils.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c extract_transcripts.c -o extract_transcripts.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c find_palindromes.c -o find_palindromes.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c gtestsim.c -o gtestsim.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c inject_code.c -o inject_code.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c letter_frequency.c -o letter_frequency.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c lowlevel_matching.c -o lowlevel_matching.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_BOC.c -o match_BOC.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_BOC2.c -o match_BOC2.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_PWM.c -o match_PWM.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_WCP.c -o match_WCP.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_pattern.c -o match_pattern.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_pattern_boyermoore.c -o match_pattern_boyermoore.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_pattern_indels.c -o match_pattern_indels.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_pattern_shiftor.c -o match_pattern_shiftor.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_pdict.c -o match_pdict.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_pdict_ACtree.c -o match_pdict_ACtree.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_pdict_ACtree2.c -o match_pdict_ACtree2.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_pdict_Twobit.c -o match_pdict_Twobit.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_pdict_utils.c -o match_pdict_utils.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c match_reporting.c -o match_reporting.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c matchprobes.c -o matchprobes.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c pmatchPattern.c -o pmatchPattern.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c replace_letter_at.c -o replace_letter_at.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c strutils.c -o strutils.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c utils.c -o utils.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/IRanges/include" -fPIC -g -O2 -c xscat.c -o xscat.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Biostrings.so BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o SparseList_utils.o XStringSet_class.o XStringSet_io.o XString_class.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o extract_transcripts.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_BOC.o match_BOC2.o match_PWM.o match_WCP.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o replace_letter_at.o strutils.o utils.o xscat.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Attaching package: 'IRanges'
The following object(s) are masked from package:base :
Map,
cbind,
mapply,
order,
pmax,
pmax.int,
pmin,
pmin.int,
rbind,
rep.int,
table
Warning in matchSignature(signature, fdef, where) :
in the method signature for function "XString" no definition for class: “AsIs”
Warning in matchSignature(signature, fdef, where) :
in the method signature for function "XStringSet" no definition for class: “AsIs”
Warning in matchSignature(signature, fdef, where) :
in the method signature for function "XStringSet" no definition for class: “probetable”
Creating a new generic function for "setequal" in "Biostrings"
Creating a new generic function for "is.unsorted" in "Biostrings"
Warning in matchSignature(signature, fdef, where) :
in the method signature for function "BStringViews" no definition for class: “file”
Warning in matchSignature(signature, fdef, where) :
in the method signature for function "consensusString" no definition for class: “BStringViews”
Warning in matchSignature(signature, fdef, where) :
in the method signature for function "consensusString" no definition for class: “DNAStringViews”
Warning in matchSignature(signature, fdef, where) :
in the method signature for function "consensusString" no definition for class: “RNAStringViews”
Creating a new generic function for "ls" in "Biostrings"
Warning in matchSignature(signature, fdef, where) :
in the method signature for function "PDict" no definition for class: “AsIs”
Warning in matchSignature(signature, fdef, where) :
in the method signature for function "PDict" no definition for class: “probetable”
** help
*** installing help indices
** building package indices ...
* DONE (Biostrings)