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Package 51/65HostnameOS / ArchBUILDCHECKBUILD BIN
ppiData 0.1.13
Tony Chiang
Snapshot Date: 2009-08-10 00:27:00 -0700 (Mon, 10 Aug 2009)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ppiData
Last Changed Rev: 701 / Revision: 938
Last Changed Date: 2008-09-03 14:16:31 -0700 (Wed, 03 Sep 2008)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.7) / i386  OK  OK  OK 
Package: ppiData
Version: 0.1.13
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD check --no-vignettes ppiData_0.1.13.tar.gz
StartedAt: 2009-08-10 01:41:37 -0700 (Mon, 10 Aug 2009)
EndedAt: 2009-08-10 01:43:09 -0700 (Mon, 10 Aug 2009)
EllapsedTime: 91.9 seconds
RetCode: 0
Status: OK
CheckDir: ppiData.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-data-experiment/meat/ppiData.Rcheck'
* using R version 2.9.1 (2009-06-26)
* using session charset: ISO8859-1
* using options '--no-vignettes'
* checking for file 'ppiData/DESCRIPTION' ... OK
* this is package 'ppiData' version '0.1.13'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiData' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

ppiData.Rcheck/00install.out:

* Installing *source* package 'ppiData' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Loading required package: graph
Loading required package: grid
** help
*** installing help indices
 >>> Building/Updating help pages for package 'ppiData'
     Formats: text html latex example 
  Cagney2001BPGraph                 text    html    latex   example
  Gavin2002BPGraph                  text    html    latex   example
  Gavin2006bPGraph                  text    html    latex   example
  Hazbun2003BPGraph                 text    html    latex   example
  Ho2002BPGraph                     text    html    latex   example
  Ito2001BPGraph                    text    html    latex   example
  ItoCore2001BPGraph                text    html    latex   example
  ItoFull2001BPGraph                text    html    latex   example
  Krogan2004BPGraph                 text    html    latex   example
  Krogan2006BPGraph                 text    html    latex   example
  Tong2002BPGraph                   text    html    latex   example
  Uetz2000BPGraph1                  text    html    latex   example
  Uetz2000BPGraph2                  text    html    latex   example
  Zhao2005BPGraph                   text    html    latex   example
  bpExperimentNames                 text    html    latex   example
  collectIntactPPIData              text    html    latex   example
  createBPList                      text    html    latex   example
Note: removing empty section \examples in file 'intAct2Sys.Rd'
  intAct2Sys                        text    html    latex
  intActPPIData                     text    html    latex   example
  map2Systematic                    text    html    latex   example
  map2Systematic2                   text    html    latex
  ppipred                           text    html    latex   example
  proteinProperty                   text    html    latex   example
  sWAC2Sys                          text    html    latex   example
  stochasticBaits                   text    html    latex   example
  tableList                         text    html    latex   example
Note: removing empty section \source in file 'twTableAPMS.Rd'
Note: removing empty section \details in file 'twTableAPMS.Rd'
Note: removing empty section \references in file 'twTableAPMS.Rd'
  twTableAPMS                       text    html    latex   example
Note: removing empty section \source in file 'twTableY2H.Rd'
Note: removing empty section \details in file 'twTableY2H.Rd'
Note: removing empty section \references in file 'twTableY2H.Rd'
  twTableY2H                        text    html    latex   example
  viableProteins                    text    html    latex   example
  y2h                               text    html    latex   example
  y2hSysGW                          text    html    latex   example
** building package indices ...
* DONE (ppiData)