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Package 281/319HostnameOS / ArchBUILDCHECKBUILD BIN
simpleaffy 2.20.0
Crispin Miller
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/simpleaffy
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386 [ OK ] OK  OK 
Package: simpleaffy
Version: 2.20.0
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD build simpleaffy
StartedAt: 2009-10-20 15:13:45 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 15:14:15 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 29.8 seconds
RetCode: 0
Status: OK
PackageFile: simpleaffy_2.20.0.tar.gz
PackageFileSize: 563.3 KiB

Command output

* checking for file 'simpleaffy/DESCRIPTION' ... OK
* preparing 'simpleaffy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package ‘simpleaffy’ ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c simpleaffy.c -o simpleaffy.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o simpleaffy.so simpleaffy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c simpleaffy.c -o simpleaffy.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o simpleaffy.so simpleaffy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc64
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c simpleaffy.c -o simpleaffy.o
gcc-4.2 -arch ppc64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o simpleaffy.so simpleaffy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c simpleaffy.c -o simpleaffy.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o simpleaffy.so simpleaffy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: Biostrings
Loading required package: IRanges

Attaching package: 'IRanges'


	The following object(s) are masked from package:base :

	 cbind,
	 duplicated,
	 order,
	 pmax,
	 pmax.int,
	 pmin,
	 pmin.int,
	 rank,
	 rbind,
	 rep.int,
	 sapply,
	 sort,
	 table,
	 unique 

** help
*** installing help indices
 >>> Building/Updating help pages for package 'simpleaffy'
     Formats: text html latex example 
Note: removing empty section \seealso in file 'PairComp-class.Rd'
  PairComp-class                    text    html    latex
  QCStats-class                     text    html    latex
  all.present                       text    html    latex   example
  all.present.in.group              text    html    latex   example
  bg.correct.sa                     text    html    latex   example
Note: removing empty section \details in file 'call.exprs.Rd'
  call.exprs                        text    html    latex   example
  detection.p.val                   text    html    latex   example
  get.annotation                    text    html    latex   example
Note: removing empty section \seealso in file 'get.array.indices.Rd'
  get.array.indices                 text    html    latex   example
  get.array.subset                  text    html    latex   example
  get.array.subset.affy             text    html    latex   example
  get.fold.change.and.t.test        text    html    latex   example
  hmap.colors                       text    html    latex   example
  hmap.eset                         text    html    latex   example
  hmap.pc                           text    html    latex   example
  journalpng                        text    html    latex   example
  justMAS                           text    html    latex   example
  pairwise.comparison               text    html    latex   example
  pairwise.filter                   text    html    latex   example
  plot.pairwise.comparison          text    html    latex   example
  plot.qc.stats                     text    html    latex   example
  qc                                text    html    latex   example
  qc.affy                           text    html    latex   example
Note: removing empty section \note in file 'qc.get.alpha1.Rd'
  qc.get.alpha1                     text    html    latex   example
Note: removing empty section \note in file 'qc.get.array.Rd'
  qc.get.array                      text    html    latex   example
Note: removing empty section \note in file 'qc.get.probes.Rd'
  qc.get.probes                     text    html    latex   example
Note: removing empty section \note in file 'qc.get.ratios.Rd'
  qc.get.ratios                     text    html    latex   example
Note: removing empty section \note in file 'qc.get.spikes.Rd'
  qc.get.spikes                     text    html    latex   example
Note: removing empty section \note in file 'qc.have.params.Rd'
  qc.have.params                    text    html    latex   example
Note: removing empty section \note in file 'qc.ok.Rd'
Note: removing empty section \arguments in file 'qc.ok.Rd'
  qc.ok                             text    html    latex   example
Note: removing empty section \note in file 'qc.read.file.Rd'
  qc.read.file                      text    html    latex   example
  qc.stats                          text    html    latex   example
Note: removing empty section \details in file 'read.affy.Rd'
  read.affy                         text    html    latex   example
Note: removing empty section \details in file 'read.affy.mixed.Rd'
  read.affy.mixed                   text    html    latex   example
Note: removing empty section \note in file 'setQCEnvironment.Rd'
  setQCEnvironment                  text    html    latex   example
Note: removing empty section \value in file 'simpleaffy-deprecated.Rd'
Note: removing empty section \note in file 'simpleaffy-deprecated.Rd'
  simpleaffy-deprecated             text    html    latex   example
  standard.pearson                  text    html    latex   example
  trad.scatter.plot                 text    html    latex   example
** building package indices ...
* DONE (simpleaffy)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'simpleaffy_2.20.0.tar.gz'