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Package 254/319HostnameOS / ArchBUILDCHECKBUILD BIN
rflowcyt 1.16.0
N. LeMeur
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/rflowcyt
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
Package: rflowcyt
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes rflowcyt_1.16.0.tar.gz
StartedAt: 2009-10-20 18:39:36 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 18:46:01 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 384.3 seconds
RetCode: 0
Status: OK
CheckDir: rflowcyt.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/rflowcyt.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49420)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'rflowcyt/DESCRIPTION' ... OK
* this is package 'rflowcyt' version '1.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rflowcyt' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking tests ...
  Running ‘FCSclass-tests.R’
  Running ‘FCSgateclass-tests.R’
  Running ‘FCSmetadataclass-tests.R’
  Running ‘fluors.FCS.R’
  Running ‘read.FCS-tests.R’
  Running ‘runflowcytests-tests.R’
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

rflowcyt.Rcheck/00install.out:

* Installing *source* package ‘rflowcyt’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: spam
Package 'spam' is loaded. Spam version 0.15-5 (2009-09-13).
Type demo( spam) for some demos, help( Spam) for an overview
of this package.
Help for individual functions is optained byadding the
suffix '.spam' to the function name, e.g. 'help(chol.spam)'.

Attaching package: 'spam'


	The following object(s) are masked from package:base :

	 backsolve,
	 forwardsolve 

 Try help(fields) for an overview of this library
fields web: http://www.image.ucar.edu/Software/Fields 
Loading required package: grid
Loading required package: lattice
Loading required package: akima
locfit 1.5-4 	 2007-11-27 
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RColorBrewer
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)
Loading required package: sp

Spatial Point Pattern Analysis Code in S-Plus

 Version 2 - Spatial and Space-Time analysis
Loading required package: splines

Attaching package: 'survival'


	The following object(s) are masked from package:robustbase :

	 heart 


Attaching package: 'xtable'


	The following object(s) are masked from package:spam :

	 display 

KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
** help
*** installing help indices
 >>> Building/Updating help pages for package 'rflowcyt'
     Formats: text html latex example 
  ContourScatterPlot                text    html    latex   example
  FCS-class                         text    html    latex   example
  FCSgate-class                     text    html    latex   example
Note: removing empty section \examples in file 'FCSggobi-class.Rd'
  FCSggobi-class                    text    html    latex
  FCSmetadata-class                 text    html    latex   example
  FCSsummary-class                  text    html    latex   example
  FHCRC.HVTNFCS                     text    html    latex   example
  ImageParCoord                     text    html    latex   example
  KS.flowcytest                     text    html    latex   example
  MODE                              text    html    latex   example
  PercentPos.FCS                    text    html    latex   example
  ProbBin.FCS                       text    html    latex   example
  ProbBin.flowcytest                text    html    latex   example
  ROC.FCS                           text    html    latex   example
  VRC.HVTNFCS                       text    html    latex   example
  WLR.flowcytest                    text    html    latex   example
  add.parallel.coordinates          text    html    latex   example
  add.parallelCoordinates           text    html    latex   example
  addParameter-methods              text    html    latex
  boxplot.FCS                       text    html    latex   example
  breakpoints.ProbBin               text    html    latex   example
  checkvars-methods                 text    html    latex
  coerce-FCSformat                  text    html    latex   example
  coerce-methods                    text    html    latex
  convertS3toS4                     text    html    latex   example
  createGate                        text    html    latex   example
  cytoSet-class                     text    html    latex   example
  dim.FCS-methods                   text    html    latex
  emp.f                             text    html    latex   example
  equals-methods                    text    html    latex
  extractGateHistory                text    html    latex   example
  extractGatedData                  text    html    latex   example
  fcs.type                          text    html    latex   example
  fixvars-methods                   text    html    latex
  fluors-methods                    text    html    latex
  gate.IPC                          text    html    latex   example
  get.h                             text    html    latex   example
  get.num.modes                     text    html    latex   example
  get.p                             text    html    latex   example
  ggobi-methods                     text    html    latex
  legend.CSP                        text    html    latex   example
  make.grid                         text    html    latex   example
  metaData-methods                  text    html    latex
  pairs.CSP                         text    html    latex   example
  parallelCoordinates               text    html    latex   example
  pkci2.flowcytest                  text    html    latex   example
  plot-methods                      text    html    latex
  plot.ProbBin.FCS                  text    html    latex   example
  plot2sets.FCS                     text    html    latex   example
  plotECDF.FCS                      text    html    latex   example
  plotQA.FCS                        text    html    latex   example
  plotdensity.FCS                   text    html    latex   example
  plotvar.FCS                       text    html    latex   example
  print-methods                     text    html    latex
  read.FCS                          text    html    latex   example
  read.series.FCS                   text    html    latex   example
Note: removing empty section \value in file 'rect.box.idx.Rd'
  rect.box.idx                      text    html    latex   example
  rflowcyt-defunct                  text    html    latex
  runflowcytests                    text    html    latex   example
  show-methods                      text    html    latex
  showgate.FCS                      text    html    latex   example
  standard                          text    html    latex   example
  subset-methods                    text    html    latex
  subset2-methods                   text    html    latex
  subset2assign-methods             text    html    latex
  subsetassign-methods              text    html    latex
  summary-methods                   text    html    latex
  summary.ProbBin.FCS               text    html    latex   example
  xgobi.FCS                         text    html    latex   example
** building package indices ...
* DONE (rflowcyt)