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Package 226/319HostnameOS / ArchBUILDCHECKBUILD BIN
pgUtils 1.16.0
Johannes Rainer
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/pgUtils
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 N O T   S U P P O R T E D
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
Package: pgUtils
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes pgUtils_1.16.0.tar.gz
StartedAt: 2009-10-20 18:29:48 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 18:30:12 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 24.3 seconds
RetCode: 0
Status: OK
CheckDir: pgUtils.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/pgUtils.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49420)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'pgUtils/DESCRIPTION' ... OK
* this is package 'pgUtils' version '1.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pgUtils' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
dbColnames: no visible binding for global variable ‘res’
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

pgUtils.Rcheck/00install.out:

* Installing *source* package ‘pgUtils’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'pgUtils'
     Formats: text html latex example 
Note: removing empty section \note in file 'AutoReference.Rd'
Note: removing empty section \references in file 'AutoReference.Rd'
Note: removing empty section \examples in file 'AutoReference.Rd'
  AutoReference                     text    html    latex
Note: removing empty section \details in file 'auto.fk.name.Rd'
Note: removing empty section \references in file 'auto.fk.name.Rd'
Note: removing empty section \seealso in file 'auto.fk.name.Rd'
Note: removing empty section \examples in file 'auto.fk.name.Rd'
  auto.fk.name                      text    html    latex
Note: removing empty section \details in file 'auto.pk.name.Rd'
Note: removing empty section \references in file 'auto.pk.name.Rd'
Note: removing empty section \seealso in file 'auto.pk.name.Rd'
Note: removing empty section \examples in file 'auto.pk.name.Rd'
  auto.pk.name                      text    html    latex
Note: removing empty section \details in file 'auto.pk.seq.Rd'
Note: removing empty section \references in file 'auto.pk.seq.Rd'
Note: removing empty section \seealso in file 'auto.pk.seq.Rd'
Note: removing empty section \examples in file 'auto.pk.seq.Rd'
  auto.pk.seq                       text    html    latex
Note: removing empty section \references in file 'createDBTable.Rd'
  createDBTable                     text    html    latex   example
Note: removing empty section \references in file 'createSequence.Rd'
  createSequence                    text    html    latex
  dbColnames                        text    html    latex
  dbListDatabases                   text    html    latex
Note: removing empty section \references in file 'dbListSequences.Rd'
  dbListSequences                   text    html    latex
Note: removing empty section \references in file 'deleteDBEntry.Rd'
Note: removing empty section \examples in file 'deleteDBEntry.Rd'
  deleteDBEntry                     text    html    latex
Note: removing empty section \references in file 'do.log.Rd'
  do.log                            text    html    latex
  getRefAttribute-methods           text    html    latex
  getRefColumn-methods              text    html    latex
  getRefTable-methods               text    html    latex
  getSourceAttribute-methods        text    html    latex
  getSourceColumn-methods           text    html    latex
Note: removing empty section \references in file 'insertIntoTable.Rd'
  insertIntoTable                   text    html    latex   example
Note: removing empty section \references in file 'log.file.Rd'
  log.file                          text    html    latex
Note: removing empty section \details in file 'log.level.Rd'
Note: removing empty section \references in file 'log.level.Rd'
  log.level                         text    html    latex
Note: removing empty section \details in file 'loggit.Rd'
Note: removing empty section \references in file 'loggit.Rd'
Note: removing empty section \seealso in file 'loggit.Rd'
Note: removing empty section \examples in file 'loggit.Rd'
  loggit                            text    html    latex
Note: removing empty section \references in file 'searchIn.Rd'
Note: removing empty section \examples in file 'searchIn.Rd'
  searchIn                          text    html    latex
Note: removing empty section \references in file 'updateDBTable.Rd'
Note: removing empty section \examples in file 'updateDBTable.Rd'
  updateDBTable                     text    html    latex
** building package indices ...
* DONE (pgUtils)