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Package 212/319HostnameOS / ArchBUILDCHECKBUILD BIN
ontoTools 1.22.0
Vince Carey
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/ontoTools
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: ontoTools
Version: 1.22.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD build ontoTools
StartedAt: 2009-10-20 14:11:39 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 14:14:07 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 147.8 seconds
RetCode: 0
Status: OK
PackageFile: ontoTools_1.22.0.tar.gz
PackageFileSize: 3.308 MiB

Command output

* checking for file 'ontoTools/DESCRIPTION' ... OK
* preparing 'ontoTools':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'ontoTools' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Package SparseM (0.80) loaded.  
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 

Loading required package: DBI
Creating a generic for "colSums" in package  "ontoTools"
    (the supplied definition differs from and overrides the implicit generic in package "base": Formal arguments differ: (x, na.rm, dims), (x, na.rm, dims, ...))
Creating a generic for "rowSums" in package  "ontoTools"
    (the supplied definition differs from and overrides the implicit generic in package "base": Formal arguments differ: (x, na.rm, dims), (x, na.rm, dims, ...))
Creating a new generic function for "grep" in "ontoTools"
In method for function "grep": expanding the signature to include
omitted arguments in definition: invert = "missing"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'ontoTools'
     Formats: text html latex example chm 
Note: removing empty section \references in file 'A.csr.Rd'
Note: removing empty section \references in file 'A.csr.Rd'
  A.csr                             text    html    latex           chm
Note: removing empty section \value in file 'GDI.Rd'
Note: removing empty section \references in file 'GDI.Rd'
Note: removing empty section \value in file 'GDI.Rd'
Note: removing empty section \references in file 'GDI.Rd'
  GDI                               text    html    latex   example chm
  LLGOMFcp                          text    html    latex           chm
  OOC-class                         text    html    latex   example chm
Note: removing empty section \references in file 'SGDIvocab.Rd'
Note: removing empty section \references in file 'SGDIvocab.Rd'
  SGDIvocab                         text    html    latex   example chm
Note: removing empty section \value in file 'STMA.Rd'
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Note: removing empty section \references in file 'STMA.Rd'
  STMA                              text    html    latex   example chm
Note: removing empty section \details in file 'accessMat.Rd'
Note: removing empty section \examples in file 'accessMat.Rd'
Note: removing empty section \details in file 'accessMat.Rd'
Note: removing empty section \examples in file 'accessMat.Rd'
  accessMat                         text    html    latex           chm
  buildGOgraph                      text    html    latex   example chm
Note: removing empty section \examples in file 'compoundGraph-class.Rd'
Note: removing empty section \examples in file 'compoundGraph-class.Rd'
  compoundGraph-class               text    html    latex           chm
  depthStruct                       text    html    latex   example chm
  gomfAmat                          text    html    latex           chm
Note: removing empty section \source in file 'litOnto.Rd'
Note: removing empty section \references in file 'litOnto.Rd'
Note: removing empty section \source in file 'litOnto.Rd'
Note: removing empty section \references in file 'litOnto.Rd'
  litOnto                           text    html    latex           chm
  namedSparse-class                 text    html    latex   example chm
  ontology-class                    text    html    latex   example chm
Note: removing empty section \references in file 'ooMapLL2GOMFdemo.Rd'
Note: removing empty section \references in file 'ooMapLL2GOMFdemo.Rd'
  ooMapLL2GOMFdemo                  text    html    latex           chm
  otkvEnv2namedSparse               text    html    latex   example chm
Note: removing empty section \examples in file 'rootedDAG-class.Rd'
Note: removing empty section \examples in file 'rootedDAG-class.Rd'
  rootedDAG-class                   text    html    latex           chm
  semsim                            text    html    latex   example chm
Note: removing empty section \references in file 'taggedHierNomenclature-class.Rd'
Note: removing empty section \references in file 'taggedHierNomenclature-class.Rd'
  taggedHierNomenclature-class      text    html    latex   example chm
  toDot-methods                     text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\meat\ontoTools\chm\ontoTools.chm





Compile time: 0 minutes, 2 seconds

21	Topics

180	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\meat\ontoTools\chm\ontoTools.chm, 43,884 bytes

Compression decreased file by 62,482 bytes.

** building package indices ...
** MD5 sums
* DONE (ontoTools)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'ontoTools_1.22.0.tar.gz'