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Package 208/319HostnameOS / ArchBUILDCHECKBUILD BIN
oligoClasses 1.6.0
Benilton Carvalho
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/oligoClasses
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
Package: oligoClasses
Version: 1.6.0
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes oligoClasses_1.6.0.tar.gz
StartedAt: 2009-10-20 18:18:52 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 18:20:45 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 113.0 seconds
RetCode: 0
Status: OK
CheckDir: oligoClasses.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/oligoClasses.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49420)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'oligoClasses/DESCRIPTION' ... OK
* this is package 'oligoClasses' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'oligoClasses' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

oligoClasses.Rcheck/00install.out:

* Installing *source* package ‘oligoClasses’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
 >>> Building/Updating help pages for package 'oligoClasses'
     Formats: text html latex example 
  DBPDInfo-class                    text    html    latex
  FeatureSetExtensions-class        text    html    latex   example
  Index-methods                     text    html    latex   example
  PDInfo-methods                    text    html    latex   example
  QuantificationSet-class           text    html    latex   example
  Sequences-methods                 text    html    latex
  SnpCallSet-methods                text    html    latex
  SnpCallSetPlus-class              text    html    latex   example
  SnpCnvQSet-class                  text    html    latex   example
  SnpCopyNumberSet-methods          text    html    latex
  SnpLevelSet-class                 text    html    latex   example
  SnpQSet-class                     text    html    latex
  SnpQSet-methods                   text    html    latex
  SnpSetExtensions-class            text    html    latex
  affyPlatforms                     text    html    latex   example
  chromosome                        text    html    latex
  data-efsExample                   text    html    latex   example
  data-scqsExample                  text    html    latex   example
  data-sfsExample                   text    html    latex   example
  data-sqsExample                   text    html    latex   example
  db                                text    html    latex   example
  exprs-methods                     text    html    latex
  genomeBuild                       text    html    latex
  getPlatformDesign                 text    html    latex
  kind                              text    html    latex   example
  length-methods                    text    html    latex
  manufacturer-methods              text    html    latex
  oligoSnpSet-methods               text    html    latex
  platform-methods                  text    html    latex
  pmAllele                          text    html    latex
  pmFragmentLength-methods          text    html    latex
  pmPosition                        text    html    latex
  pmStrand                          text    html    latex
  position                          text    html    latex
  probeNames                        text    html    latex
  sampleNames-methods               text    html    latex
  snprmaSummaries                   text    html    latex
** building package indices ...
* DONE (oligoClasses)