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Package 200/319HostnameOS / ArchBUILDCHECKBUILD BIN
multtest 2.0.0
Katherine S. Pollard
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/multtest
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: multtest
Version: 2.0.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes multtest_2.0.0.tar.gz
StartedAt: 2009-10-20 17:45:39 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 17:46:54 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 75.3 seconds
RetCode: 0
Status: OK
CheckDir: multtest.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/multtest.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'multtest/DESCRIPTION' ... OK
* this is package 'multtest' version '2.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'multtest' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
boot.null: no visible global function definition for 'clusterApply'
boot.null: no visible global function definition for 'clusterApplyLB'
EBMTP: no visible global function definition for 'makeCluster'
EBMTP: no visible global function definition for 'clusterEvalQ'
EBMTP: no visible global function definition for 'stopCluster'
EBMTP: no visible binding for global variable 'V'
EBMTP: no visible binding for global variable 'S'
lmX : <anonymous>: no visible global function definition for 'rlm'
lmY : <anonymous>: no visible global function definition for 'rlm'
MTP: no visible global function definition for 'makeCluster'
MTP: no visible global function definition for 'clusterEvalQ'
MTP: no visible global function definition for 'stopCluster'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

multtest.Rcheck/00install.out:

* Installing *source* package 'multtest' ...
** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"     -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -c Rpack.c -o Rpack.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"     -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -c VScount.c -o VScount.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"     -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -c block_sampling_fixed.c -o block_sampling_fixed.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"     -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -c bootloop.c -o bootloop.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"     -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -c mt.c -o mt.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"     -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -c pairt_sampling.c -o pairt_sampling.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"     -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"     -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -c random.c -o random.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"     -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -c sampling.c -o sampling.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"     -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -c sampling_fixed.c -o sampling_fixed.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"     -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -c stat_func.c -o stat_func.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"     -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -c stat_order.c -o stat_order.o
gcc -shared -s -o multtest.dll tmp.def Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "as.list" in "multtest"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'multtest'
     Formats: text html latex example chm 
  EBMTP-class                       text    html    latex   example chm
  EBMTP                             text    html    latex   example chm
  Hsets                             text    html    latex   example chm
  MTP-class                         text    html    latex   example chm
  MTP-methods                       text    html    latex           chm
  MTP                               text    html    latex   example chm
  boot.null                         text    html    latex   example chm
  corr.null                         text    html    latex   example chm
  fwer2gfwer                        text    html    latex   example chm
  get.index                         text    html    latex   example chm
  golub                             text    html    latex           chm
  meanX                             text    html    latex   example chm
  mt.internal                       text    html    latex           chm
  mt.maxT                           text    html    latex   example chm
  mt.plot                           text    html    latex   example chm
  mt.rawp2adjp                      text    html    latex   example chm
  mt.reject                         text    html    latex   example chm
  mt.sample.teststat                text    html    latex   example chm
  mt.teststat                       text    html    latex   example chm
  ss.maxT                           text    html    latex   example chm
  wapply                            text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\MULTTE~1.RCH\00_PKG~1\multtest\chm\multtest.chm


Compile time: 0 minutes, 1 second
22	Topics
191	Local links
48	Internet links
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\MULTTE~1.RCH\00_PKG~1\multtest\chm\multtest.chm, 121,137 bytes
Compression decreased file by 128,133 bytes.
** building package indices ...
** MD5 sums
* DONE (multtest)