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Package 109/319HostnameOS / ArchBUILDCHECKBUILD BIN
genefilter 1.24.3
Biocore Team c/o BioC user list
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/genefilter
Last Changed Rev: 42111 / Revision: 42512
Last Changed Date: 2009-10-01 16:07:35 -0700 (Thu, 01 Oct 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: genefilter
Version: 1.24.3
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD build genefilter
StartedAt: 2009-10-20 14:03:38 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 14:04:07 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 28.9 seconds
RetCode: 0
Status: OK
PackageFile: genefilter_1.24.3.tar.gz
PackageFileSize: 237 KiB

Command output

* checking for file 'genefilter/DESCRIPTION' ... OK
* preparing 'genefilter':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'genefilter' ...
** libs
  making DLL ...
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c half_range_mode.cpp -o half_range_mode.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c init.c -o init.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c nd.c -o nd.o
nd.c: In function 'gf_dist_binary':
nd.c:242: warning: unused variable 'w2'
nd.c:242: warning: unused variable 'w1'
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c pAUC.c -o pAUC.o
pAUC.c: In function 'pAUC_c':
pAUC.c:73: warning: operation on 'ta' may be undefined
pAUC.c:76: warning: operation on 'ta' may be undefined
pAUC.c:79: warning: operation on 'ta' may be undefined
pAUC.c: In function 'pAUC':
pAUC.c:141: warning: suggest parentheses around comparison in operand of |
pAUC.c:123: warning: unused variable 'i'
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c rowPAUCs.c -o rowPAUCs.o
rowPAUCs.c: In function 'ROCpAUC_c':
rowPAUCs.c:97: warning: operation on 'ta' may be undefined
rowPAUCs.c:100: warning: operation on 'ta' may be undefined
rowPAUCs.c:103: warning: operation on 'ta' may be undefined
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c rowttests.c -o rowttests.o
gfortran     -O3  -c ttest.f -o ttest.o
g++ -shared -s -o genefilter.dll tmp.def half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -lgfortran -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "plot" in "genefilter"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'genefilter'
     Formats: text html latex example chm 
  Anova                             text    html    latex   example chm
  allNA                             text    html    latex   example chm
  coxfilter                         text    html    latex   example chm
  cv                                text    html    latex   example chm
  dist2                             text    html    latex   example chm
  eSetFilter                        text    html    latex   example chm
  filterfun                         text    html    latex   example chm
  findLargest                       text    html    latex   example chm
  gapFilter                         text    html    latex   example chm
  genefilter                        text    html    latex   example chm
  genefinder                        text    html    latex   example chm
  genescale                         text    html    latex   example chm
  half.range.mode                   text    html    latex   example chm
  kOverA                            text    html    latex   example chm
  maxA                              text    html    latex   example chm
  nsFilter                          text    html    latex   example chm
  pOverA                            text    html    latex   example chm
  rowFtests                         text    html    latex   example chm
  rowROC-class                      text    html    latex   example chm
  rowSds                            text    html    latex   example chm
  rowpAUCs                          text    html    latex   example chm
  shorth                            text    html    latex   example chm
  tdata                             text    html    latex   example chm
  ttest                             text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\meat\genefilter\chm\genefilter.chm





Compile time: 0 minutes, 1 second

25	Topics

127	Local links

2	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\meat\genefilter\chm\genefilter.chm, 61,791 bytes

Compression decreased file by 56,274 bytes.

** building package indices ...
** MD5 sums
* DONE (genefilter)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'genefilter_1.24.3.tar.gz'