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Package 97/319HostnameOS / ArchBUILDCHECKBUILD BIN
flowClust 2.2.0
Raphael Gottardo
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/flowClust
Last Changed Rev: 41695 / Revision: 42512
Last Changed Date: 2009-09-15 08:18:22 -0700 (Tue, 15 Sep 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK [ OK ]
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: flowClust
Version: 2.2.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh flowClust_2.2.0.tar.gz /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R flowClust.buildbin-libdir
StartedAt: 2009-10-20 19:27:05 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 19:27:28 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 23.5 seconds
RetCode: 0
Status: OK
PackageFile: flowClust_2.2.0.tgz
PackageFileSize: 788.8 KiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --preclean --library=flowClust.buildbin-libdir flowClust_2.2.0.tar.gz'

* Installing *source* package ‘flowClust’ ...
checking for pkg-config... /usr/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c BoxCox.c -o BoxCox.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c Nu.c -o Nu.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c flowClust.c -o flowClust.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c flowClustGaussian.c -o flowClustGaussian.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c ranMVNT.c -o ranMVNT.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowClust.so BoxCox.o Nu.o flowClust.o flowClustGaussian.o ranMVNT.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
by using mclust, you accept the license agreement in the LICENSE file
and at http://www.stat.washington.edu/mclust/license.txt

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)

Attaching package: 'flowCore'


	The following object(s) are masked from package:stats :

	 alias,
	 filter 

Warning in .findOrCopyClass(class2, classDef2, where, "subclass") :
  Class "Ulist" is defined (with package slot "rrcov") but no metadata object found to revise subclass information---not exported?  Making a copy in package "flowClust"
Warning in .findOrCopyClass(class2, classDef2, where, "subclass") :
  Class "Uvector" is defined (with package slot "rrcov") but no metadata object found to revise subclass information---not exported?  Making a copy in package "flowClust"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'flowClust'
     Formats: text html latex example 
  Map                               text    html    latex
  SimulateMixture                   text    html    latex   example
  Subset                            text    html    latex
  box                               text    html    latex   example
  density                           text    html    latex
  dmvt                              text    html    latex
  dmvtmix                           text    html    latex
  flowClust-internal                text    html    latex
  flowClust-package                 text    html    latex
  flowClust                         text    html    latex   example
  hist                              text    html    latex
  miscellaneous                     text    html    latex
  plot.flowClust                    text    html    latex
  plot.flowCore                     text    html    latex
  plot.flowDens                     text    html    latex
  rbox                              text    html    latex
  rituximab                         text    html    latex
  ruleOutliers                      text    html    latex
  show.flowClust                    text    html    latex
  show.tmixFilter                   text    html    latex
  split                             text    html    latex
  summary                           text    html    latex
  tmixFilter                        text    html    latex   example
** building package indices ...
* DONE (flowClust)

                INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --library=flowClust.buildbin-libdir --libs-only flowClust_2.2.0.tar.gz'

* Installing *source* package ‘flowClust’ ...
checking for pkg-config... /usr/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c BoxCox.c -o BoxCox.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c Nu.c -o Nu.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c flowClust.c -o flowClust.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c flowClustGaussian.c -o flowClustGaussian.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c ranMVNT.c -o ranMVNT.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowClust.so BoxCox.o Nu.o flowClust.o flowClustGaussian.o ranMVNT.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
* DONE (flowClust)