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Package 89/319HostnameOS / ArchBUILDCHECKBUILD BIN
edgeR 1.2.4
Mark Robinson , Davis McCarthy
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/edgeR
Last Changed Rev: 40848 / Revision: 42512
Last Changed Date: 2009-07-26 06:43:33 -0700 (Sun, 26 Jul 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: edgeR
Version: 1.2.4
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD check --no-vignettes edgeR_1.2.4.tar.gz
StartedAt: 2009-10-20 16:05:04 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 16:05:32 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 27.5 seconds
RetCode: 0
Status: OK
CheckDir: edgeR.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/edgeR.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'edgeR/DESCRIPTION' ... OK
* this is package 'edgeR' version '1.2.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'edgeR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking tests ...
  Running 'mseq-Tests.R'
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

edgeR.Rcheck/00install.out:

* Installing *source* package 'edgeR' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
 >>> Building/Updating help pages for package 'edgeR'
     Formats: text html latex example 
  DGEList                           text    html    latex
  EBList                            text    html    latex
  Tu102                             text    html    latex
  alpha.approxeb                    text    html    latex   example
  approx.expected.info              text    html    latex   example
  condLogLikDerDelta                text    html    latex   example
  condLogLikDerSize                 text    html    latex   example
  deDGE                             text    html    latex   example
  deDGEList                         text    html    latex
  estimatePs                        text    html    latex   example
  exactTestNB                       text    html    latex   example
  findMaxD2                         text    html    latex   example
  getData                           text    html    latex   example
  interpolateHelper                 text    html    latex   example
  logLikDerP                        text    html    latex   example
  plotMA                            text    html    latex   example
  quantileAdjust                    text    html    latex   example
  readDGE                           text    html    latex   example
  splitIntoGroups                   text    html    latex   example
  splitIntoGroupsPseudo             text    html    latex   example
  tau2.0.objective                  text    html    latex   example
  topTags                           text    html    latex   example
** building package indices ...
* DONE (edgeR)