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Package 83/319HostnameOS / ArchBUILDCHECKBUILD BIN
dyebias 1.2.1
Philip Lijnzaad
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/dyebias
Last Changed Rev: 39688 / Revision: 42512
Last Changed Date: 2009-05-26 04:33:17 -0700 (Tue, 26 May 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: dyebias
Version: 1.2.1
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD check --no-vignettes dyebias_1.2.1.tar.gz
StartedAt: 2009-10-20 16:01:35 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 16:04:01 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 145.4 seconds
RetCode: 0
Status: OK
CheckDir: dyebias.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/dyebias.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'dyebias/DESCRIPTION' ... OK
* this is package 'dyebias' version '1.2.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'dyebias' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
dyebias.apply.correction: no visible global function definition for
  'maR<-'
dyebias.apply.correction: no visible global function definition for
  'maG<-'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

dyebias.Rcheck/00install.out:

* Installing *source* package 'dyebias' ...
** R
** inst
** preparing package for lazy loading
Loading required package: limma

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
 >>> Building/Updating help pages for package 'dyebias'
     Formats: text html latex example 
  dyebias.application.subset        text    html    latex   example
  dyebias.apply.correction          text    html    latex   example
  dyebias.boxplot                   text    html    latex   example
  dyebias.estimate.iGSDBs           text    html    latex   example
  dyebias.monotonicity              text    html    latex   example
  dyebias.monotonicityplot          text    html    latex   example
  dyebias.rgplot                    text    html    latex   example
  dyebias.trendplot                 text    html    latex   example
** building package indices ...
* DONE (dyebias)