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Package 57/319HostnameOS / ArchBUILDCHECKBUILD BIN
cellHTS 1.14.0
Ligia Bras
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/cellHTS
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: cellHTS
Version: 1.14.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes cellHTS_1.14.0.tar.gz
StartedAt: 2009-10-20 16:40:34 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 16:42:07 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 92.8 seconds
RetCode: 0
Status: OK
CheckDir: cellHTS.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/cellHTS.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cellHTS/DESCRIPTION' ... OK
* this is package 'cellHTS' version '1.14.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

cellHTS.Rcheck/00install.out:

* Installing *source* package 'cellHTS' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)
** help
*** installing help indices
 >>> Building/Updating help pages for package 'cellHTS'
     Formats: text html latex example chm 
  Bscore                            text    html    latex   example chm
  ROC                               text    html    latex   example chm
  annotate                          text    html    latex   example chm
  bdgpbiomart                       text    html    latex   example chm
  configure                         text    html    latex   example chm
  data-KcViab                       text    html    latex   example chm
  data-KcViabSmall                  text    html    latex   example chm
  getEnVisionRawData                text    html    latex   example chm
  getLibraryPlate                   text    html    latex   example chm
  getMatrix                         text    html    latex   example chm
  imageScreen                       text    html    latex   example chm
  normalizeChannels                 text    html    latex   example chm
  normalizePlates                   text    html    latex   example chm
Note: removing empty section \details in file 'oneRowPerId.Rd'
Note: removing empty section \details in file 'oneRowPerId.Rd'
  oneRowPerId                       text    html    latex   example chm
  plotPlateLibrary                  text    html    latex   example chm
  plotSpatialEffects                text    html    latex   example chm
  print.cellHTS                     text    html    latex   example chm
  readPlateData                     text    html    latex   example chm
  screenMatch                       text    html    latex   example chm
  summarizeChannels                 text    html    latex   example chm
  summarizeReplicates               text    html    latex   example chm
  write.tabdel                      text    html    latex   example chm
  writeReport                       text    html    latex   example chm
  writeTab                          text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\CELLHT~2.RCH\00_PKG~1\cellHTS\chm\cellHTS.chm


Compile time: 0 minutes, 1 second
25	Topics
104	Local links
0	Internet links
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\CELLHT~2.RCH\00_PKG~1\cellHTS\chm\cellHTS.chm, 62,678 bytes
Compression decreased file by 65,822 bytes.
** building package indices ...
** MD5 sums
* DONE (cellHTS)