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Package 47/319HostnameOS / ArchBUILDCHECKBUILD BIN
biomaRt 2.0.0
Steffen Durinck
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/biomaRt
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: biomaRt
Version: 2.0.0
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD check --no-vignettes biomaRt_2.0.0.tar.gz
StartedAt: 2009-10-20 15:43:48 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 15:44:16 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 27.5 seconds
RetCode: 0
Status: OK
CheckDir: biomaRt.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/biomaRt.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'biomaRt/DESCRIPTION' ... OK
* this is package 'biomaRt' version '2.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'biomaRt' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

biomaRt.Rcheck/00install.out:

* Installing *source* package 'biomaRt' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'biomaRt'
     Formats: text html latex example 
  Mart-class                        text    html    latex
Note: removing empty section \arguments in file 'NP2009code.Rd'
  NP2009code                        text    html    latex   example
  attributePages                    text    html    latex   example
  attributeSummary                  text    html    latex   example
  exportFASTA                       text    html    latex   example
  filterOptions                     text    html    latex   example
  filterType                        text    html    latex   example
  getBM                             text    html    latex   example
  getBMlist                         text    html    latex   example
  getGO                             text    html    latex   example
  getGene                           text    html    latex   example
  getLDS                            text    html    latex   example
  getSequence                       text    html    latex   example
  listAttributes                    text    html    latex   example
  listDatasets                      text    html    latex   example
  listFilters                       text    html    latex   example
Note: removing empty section \seealso in file 'listMarts.Rd'
  listMarts                         text    html    latex   example
  martDisconnect                    text    html    latex   example
  useDataset                        text    html    latex   example
  useMart                           text    html    latex   example
** building package indices ...
* DONE (biomaRt)