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Package 35/319HostnameOS / ArchBUILDCHECKBUILD BIN
beadarraySNP 1.10.0
Jan Oosting
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/beadarraySNP
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: beadarraySNP
Version: 1.10.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD build beadarraySNP
StartedAt: 2009-10-20 14:51:20 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 14:51:58 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 37.8 seconds
RetCode: 0
Status: OK
PackageFile: beadarraySNP_1.10.0.tar.gz
PackageFileSize: 626.6 KiB

Command output

* checking for file 'beadarraySNP/DESCRIPTION' ... OK
* preparing 'beadarraySNP':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'beadarraySNP' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: quantreg
Loading required package: SparseM
Package SparseM (0.80) loaded.  
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 


Attaching package: 'quantreg'


	The following object(s) are masked from package:utils :

	 vignette 

Loading required package: lodplot
Loading required package: grid
** help
*** installing help indices
 >>> Building/Updating help pages for package 'beadarraySNP'
     Formats: text html latex example chm 
  BeadstudioQC                      text    html    latex           chm
  CopynumberConversion              text    html    latex           chm
  Datasets                          text    html    latex           chm
  GenomicReports                    text    html    latex   example chm
  GetBeadStudioSampleNames          text    html    latex           chm
  PolarTransforms                   text    html    latex   example chm
  QCIllumina-class                  text    html    latex           chm
  Sample_Map2Samplesheet            text    html    latex           chm
  alterCN                           text    html    latex           chm
  arrayType                         text    html    latex           chm
  backgroundCorrect.SNP             text    html    latex   example chm
  backgroundEstimate                text    html    latex           chm
  calculateLOH                      text    html    latex           chm
  calculateQCarray                  text    html    latex   example chm
  class.SnpSetIllumina              text    html    latex           chm
  compareGenotypes                  text    html    latex   example chm
  createCNSummary                   text    html    latex           chm
Note: removing empty section \examples in file 'dist.GT.Rd'
Note: removing empty section \examples in file 'dist.GT.Rd'
  dist.GT                           text    html    latex           chm
  getDNAindex                       text    html    latex           chm
  heterozygosity                    text    html    latex   example chm
  heterozygousSNPs                  text    html    latex   example chm
  interactiveCNselect               text    html    latex           chm
  normalizeBetweenAlleles.SNP       text    html    latex   example chm
  normalizeBetweenSubsamples.SNP    text    html    latex   example chm
  normalizeLoci.SNP                 text    html    latex   example chm
  normalizeWithinArrays.SNP         text    html    latex   example chm
  pdfChromosomesSmoothCopyNumber    text    html    latex   example chm
  pdfQC                             text    html    latex           chm
  plotGoldenGate4OPA                text    html    latex           chm
  plotQC                            text    html    latex   example chm
  read.SnpSetIllumina               text    html    latex   example chm
  removeLowQualityProbes            text    html    latex           chm
  removeLowQualitySamples           text    html    latex   example chm
  renameOPA                         text    html    latex           chm
  reportGenotypeSegmentation        text    html    latex           chm
  reportSamplePanelQC-methods       text    html    latex   example chm
  segmentate                        text    html    latex           chm
  setRealCN                         text    html    latex           chm
  smoothed.intensity                text    html    latex           chm
  standardNormalization             text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\meat\beadarraySNP\chm\beadarraySNP.chm





Compile time: 0 minutes, 2 seconds

41	Topics

206	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\meat\beadarraySNP\chm\beadarraySNP.chm, 59,681 bytes

Compression decreased file by 84,774 bytes.

** building package indices ...
** MD5 sums
* DONE (beadarraySNP)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'beadarraySNP_1.10.0.tar.gz'