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Package 284/319HostnameOS / ArchBUILDCHECKBUILD BIN
SLGI 1.4.0
Nolwenn Le Meur
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/SLGI
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: SLGI
Version: 1.4.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes SLGI_1.4.0.tar.gz
StartedAt: 2009-10-20 18:26:17 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 18:34:09 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 471.6 seconds
RetCode: 0
Status: OK
CheckDir: SLGI.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/SLGI.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SLGI/DESCRIPTION' ... OK
* this is package 'SLGI' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SLGI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

SLGI.Rcheck/00install.out:

* Installing *source* package 'SLGI' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: RpsiXML
Loading required package: annotate
Loading required package: graph
Loading required package: RBGL
Loading required package: hypergraph

Attaching package: 'hypergraph'


	The following object(s) are masked from package:AnnotationDbi :

	 head,
	 tail 


	The following object(s) are masked from package:utils :

	 head,
	 tail 

Warning in namespaceImportFrom(self, asNamespace(ns)) :
  replacing previous import: addNode
Loading required package: apComplex
Creating a new generic function for "plot" in "SLGI"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'SLGI'
     Formats: text html latex example chm 
  Atong                             text    html    latex   example chm
  AtongFnDomain                     text    html    latex   example chm
  AtongPair                         text    html    latex   example chm
  Boeke                             text    html    latex           chm
  SDL                               text    html    latex   example chm
  SGA                               text    html    latex   example chm
  SGD.SL                            text    html    latex   example chm
  TFmat                             text    html    latex   example chm
  byComplex                         text    html    latex   example chm
  comemberIn                        text    html    latex   example chm
  compare                           text    html    latex   example chm
  congruence                        text    html    latex   example chm
  createSquareMatrix                text    html    latex   example chm
  dSLAM.GPL1444                     text    html    latex           chm
  domainDist                        text    html    latex   example chm
  essglist                          text    html    latex   example chm
  getFASTAname                      text    html    latex   example chm
  getInteraction                    text    html    latex   example chm
  getSharedDomains                  text    html    latex   example chm
  getSharedInteraction              text    html    latex   example chm
  getTestedPairs                    text    html    latex   example chm
  getUniquePairs                    text    html    latex   example chm
  gi2005                            text    html    latex   example chm
  gi2007                            text    html    latex   example chm
  gi2Interactome                    text    html    latex   example chm
  hyperG                            text    html    latex   example chm
  iSummary                          text    html    latex   example chm
  modelSLGI                         text    html    latex   example chm
  normInteraction                   text    html    latex   example chm
  plot                              text    html    latex   example chm
  seqMatcherAlign                   text    html    latex   example chm
  sharedBy                          text    html    latex   example chm
  sharedInt                         text    html    latex   example chm
  siResult-class                    text    html    latex   example chm
  test2Interact                     text    html    latex   example chm
  topInteraction                    text    html    latex   example chm
  twoWayTable                       text    html    latex   example chm
  withinComplex                     text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\SLGI~1.RCH\00_PKG~1\SLGI\chm\SLGI.chm


Compile time: 0 minutes, 0 seconds
39	Topics
115	Local links
8	Internet links
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\SLGI~1.RCH\00_PKG~1\SLGI\chm\SLGI.chm, 58,821 bytes
Compression decreased file by 58,531 bytes.
** building package indices ...
** MD5 sums
* DONE (SLGI)