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Package 255/319HostnameOS / ArchBUILDCHECKBUILD BIN
Rgraphviz 1.22.2
Kasper Hansen
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/Rgraphviz
Last Changed Rev: 42338 / Revision: 42512
Last Changed Date: 2009-10-12 19:10:16 -0700 (Mon, 12 Oct 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: Rgraphviz
Version: 1.22.2
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes Rgraphviz_1.22.2.tar.gz
StartedAt: 2009-10-20 18:11:42 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 18:12:42 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 59.5 seconds
RetCode: 0
Status: OK
CheckDir: Rgraphviz.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/Rgraphviz.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Rgraphviz/DESCRIPTION' ... OK
* this is package 'Rgraphviz' version '1.22.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Rgraphviz' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

Rgraphviz.Rcheck/00install.out:

* Installing *source* package 'Rgraphviz' ...
Using the following environment variables
GRAPHVIZ_INSTALL_DIR=C:\/Graphviz2.20
GRAPHVIZ_INSTALL_MAJOR=2
GRAPHVIZ_INSTALL_MINOR=20
GRAPHVIZ_INSTALL_SUBMINOR=3
Using the following compilation and linking flags for Rgraphviz
   PKG_CPPFLAGS=-IC:\/Graphviz2.20/include/graphviz
   PKG_LIBS=-LC:\/Graphviz2.20/bin -lgvc-4 -lgraph-4 -lcdt-4
   GVIZ_DEFS=-DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
Created file src/Makevars.win
Created file R/graphviz_build_version.R
** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32       -O3 -Wall  -std=gnu99 -c LL_funcs.c -o LL_funcs.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32       -O3 -Wall  -std=gnu99 -c Rgraphviz.c -o Rgraphviz.o
Rgraphviz.c:18: warning: C99 inline functions are not supported; using GNU89
Rgraphviz.c:18: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32       -O3 -Wall  -std=gnu99 -c RgraphvizInit.c -o RgraphvizInit.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32       -O3 -Wall  -std=gnu99 -c agopen.c -o agopen.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32       -O3 -Wall  -std=gnu99 -c agread.c -o agread.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32       -O3 -Wall  -std=gnu99 -c agwrite.c -o agwrite.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32       -O3 -Wall  -std=gnu99 -c bezier.c -o bezier.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32       -O3 -Wall  -std=gnu99 -c buildEdgeList.c -o buildEdgeList.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32       -O3 -Wall  -std=gnu99 -c buildNodeList.c -o buildNodeList.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32       -O3 -Wall  -std=gnu99 -c doLayout.c -o doLayout.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32       -O3 -Wall  -std=gnu99 -c graphvizVersion.c -o graphvizVersion.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32       -O3 -Wall  -std=gnu99 -c init.c -o init.o
gcc -shared -s -o Rgraphviz.dll tmp.def LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o -LC:/Graphviz2.20/bin -lgvc-4 -lgraph-4 -lcdt-4 -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** inst
** preparing package for lazy loading
Creating a new generic function for "head" in "Rgraphviz"
Creating a new generic function for "tail" in "Rgraphviz"
Creating a new generic function for "lines" in "Rgraphviz"
Creating a new generic function for "plot" in "Rgraphviz"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'Rgraphviz'
     Formats: text html latex example chm 
  AgEdge-class                      text    html    latex   example chm
  AgNode-class                      text    html    latex   example chm
  AgTextLabel-class                 text    html    latex   example chm
  BezierCurve-class                 text    html    latex   example chm
  GraphvizAttributes                text    html    latex           chm
  GraphvizLayouts                   text    html    latex   example chm
  Ragraph-class                     text    html    latex   example chm
  agopen                            text    html    latex   example chm
  agopenSimple                      text    html    latex   example chm
  agwrite                           text    html    latex   example chm
  boundingBox-class                 text    html    latex   example chm
  buildNodeList                     text    html    latex   example chm
  clusterData-methods               text    html    latex   example chm
  getDefaultAttrs                   text    html    latex   example chm
  graphData-methods                 text    html    latex           chm
  graphDataDefaults-methods         text    html    latex           chm
  graphLayout                       text    html    latex   example chm
  graphvizVersion                   text    html    latex   example chm
  layoutGraph                       text    html    latex   example chm
  makeNodeAttrs                     text    html    latex   example chm
  pEdge-class                       text    html    latex   example chm
  pNode-class                       text    html    latex   example chm
  pieGlyph                          text    html    latex   example chm
  plot-methods                      text    html    latex   example chm
  removedEdges                      text    html    latex   example chm
  renderGraph                       text    html    latex   example chm
  toDot-methods                     text    html    latex   example chm
  toFile                            text    html    latex   example chm
  xyPoint-class                     text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\RGRAPH~1.RCH\00_PKG~1\RGRAPH~1\chm\Rgraphviz.chm


Compile time: 0 minutes, 1 second
30	Topics
289	Local links
5	Internet links
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\RGRAPH~1.RCH\00_PKG~1\RGRAPH~1\chm\Rgraphviz.chm, 83,680 bytes
Compression decreased file by 122,241 bytes.
** building package indices ...
** MD5 sums
* DONE (Rgraphviz)