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Package 262/319HostnameOS / ArchBUILDCHECKBUILD BIN
RNAither 1.4.2
Nora Rieber
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/RNAither
Last Changed Rev: 41188 / Revision: 42512
Last Changed Date: 2009-08-17 06:10:09 -0700 (Mon, 17 Aug 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: RNAither
Version: 1.4.2
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD check --no-vignettes RNAither_1.4.2.tar.gz
StartedAt: 2009-10-20 17:45:34 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 17:48:45 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 191.5 seconds
RetCode: 0
Status: OK
CheckDir: RNAither.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/RNAither.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RNAither/DESCRIPTION' ... OK
* this is package 'RNAither' version '1.4.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RNAither' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

RNAither.Rcheck/00install.out:

* Installing *source* package 'RNAither' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: graph
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: SparseM
Package SparseM (0.80) loaded.  
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 


groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)
** help
*** installing help indices
 >>> Building/Updating help pages for package 'RNAither'
     Formats: text html latex example 
  BScore                            text    html    latex   example
  DRQualControl                     text    html    latex   example
  LiWongRank                        text    html    latex   example
  MannWhitney                       text    html    latex   example
  RNAither-package                  text    html    latex
  RankProduct                       text    html    latex   example
  SNRQualControl                    text    html    latex   example
  Ttest                             text    html    latex   example
  ZPRIMEQualControl                 text    html    latex   example
  ZScore                            text    html    latex   example
  ZScorePerScreen                   text    html    latex   example
  ZScorePlot                        text    html    latex   example
  ZScorePlotTwo                     text    html    latex   example
  channelPlot                       text    html    latex   example
  closestToZero                     text    html    latex   example
  compareHits                       text    html    latex   example
  compareReplicaPlates              text    html    latex   example
  compareReplicateSD                text    html    latex   example
  compareReplicateSDPerScreen       text    html    latex   example
  compareReplicates                 text    html    latex   example
  controlDensity                    text    html    latex   example
  controlDensityPerPlate            text    html    latex   example
  controlDensityPerScreen           text    html    latex   example
  controlNorm                       text    html    latex   example
  createSubset                      text    html    latex   example
  dataset                           text    html    latex
  datasetDrosophila                 text    html    latex
  discardLabtek                     text    html    latex   example
  discardWells                      text    html    latex   example
  divNorm                           text    html    latex   example
  divideChannels                    text    html    latex   example
  eraseDataSetColumn                text    html    latex   example
  findReplicates                    text    html    latex   example
  furthestFromZero                  text    html    latex   example
  generateDatasetFile               text    html    latex   example
  generateRepMatNoFilter            text    html    latex   example
  generateReplicateMat              text    html    latex   example
  gseaAnalysis                      text    html    latex   example
  header                            text    html    latex
  headerDrosophila                  text    html    latex
  hitselectionPval                  text    html    latex   example
  hitselectionZscore                text    html    latex   example
  hitselectionZscorePval            text    html    latex   example
  incorporatepValVec                text    html    latex   example
  indexSubset                       text    html    latex   example
  joinDatasetFiles                  text    html    latex   example
  joinDatasets                      text    html    latex   example
  lowessNorm                        text    html    latex   example
  mainAnalysis                      text    html    latex   example
  makeBoxplot4PlateType             text    html    latex   example
  makeBoxplotControls               text    html    latex   example
  makeBoxplotControlsPerPlate       text    html    latex   example
  makeBoxplotControlsPerScreen      text    html    latex   example
  makeBoxplotPerPlate               text    html    latex   example
  makeBoxplotPerScreen              text    html    latex   example
  multTestAdjust                    text    html    latex   example
  numCellQualControl                text    html    latex   example
  orderGeneIDs                      text    html    latex   example
  pValVec1                          text    html    latex
  pValVec2                          text    html    latex
  percCellQualControl               text    html    latex   example
  plotBar                           text    html    latex   example
  plotControlHisto                  text    html    latex   example
  plotControlHistoPerplate          text    html    latex   example
  plotControlHistoPerscreen         text    html    latex   example
  plotHisto                         text    html    latex   example
  plotHistoPerplate                 text    html    latex   example
  plotHistoPerscreen                text    html    latex   example
  plotQQ                            text    html    latex   example
  plotQQperplate                    text    html    latex   example
  plotQQperscreen                   text    html    latex   example
  quantileNormalization             text    html    latex   example
  replicatesCV                      text    html    latex   example
  replicatesSpearmancor             text    html    latex   example
  rms                               text    html    latex   example
  saveDataset                       text    html    latex   example
  saveOldIntensityColumns           text    html    latex   example
  savepValVec                       text    html    latex   example
  scoredDataset1                    text    html    latex
  scoredDataset2                    text    html    latex
  spatialDistrib                    text    html    latex   example
  spatialDistribHits                text    html    latex   example
  subtractBackground                text    html    latex   example
  sumChannels                       text    html    latex   example
  summarizeReps                     text    html    latex   example
  summarizeRepsNoFiltering          text    html    latex   example
  trim                              text    html    latex   example
  varAdjust                         text    html    latex   example
  vennDiag                          text    html    latex   example
  volcanoPlot                       text    html    latex   example
** building package indices ...
* DONE (RNAither)