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Package 245/319HostnameOS / ArchBUILDCHECKBUILD BIN
RBGL 1.20.0
Li Long
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/RBGL
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386 [ ERROR ] skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 
Package: RBGL
Version: 1.20.0
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD build RBGL
StartedAt: 2009-10-20 15:04:18 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 15:06:35 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 136.9 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'RBGL/DESCRIPTION' ... OK
* preparing 'RBGL':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* running cleanup
removing exploded boost header source...
* installing the package to re-build vignettes
* Installing *source* package ‘RBGL’ ...
untarring boost include tree...
** libs
** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -mtune=core2 -g -O2 -c bbc.cpp -o bbc.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -mtune=core2 -g -O2 -c cliques.cpp -o cliques.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -mtune=core2 -g -O2 -c clusteringCoef.cpp -o clusteringCoef.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -mtune=core2 -g -O2 -c dominatorTree.cpp -o dominatorTree.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -mtune=core2 -g -O2 -c hcs.cpp -o hcs.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -mtune=core2 -g -O2 -c incrConnComp.cpp -o incrConnComp.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -mtune=core2 -g -O2 -c interfaces.cpp -o interfaces.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -mtune=core2 -g -O2 -c layout.cpp -o layout.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -mtune=core2 -g -O2 -c minST.cpp -o minST.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -mtune=core2 -g -O2 -c mincut.cpp -o mincut.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -mtune=core2 -g -O2 -c ordering.cpp -o ordering.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -mtune=core2 -g -O2 -c shortestPath.cpp -o shortestPath.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -mtune=core2 -g -O2 -c sna.cpp -o sna.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -mtune=core2 -g -O2 -c transitive_closure.cpp -o transitive_closure.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -mtune=core2 -g -O2 -c wavefront.cpp -o wavefront.o
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o hcs.o incrConnComp.o interfaces.o layout.o minST.o mincut.o ordering.o shortestPath.o sna.o transitive_closure.o wavefront.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'RBGL'
     Formats: text html latex example 
  FileDep                           text    html    latex   example
  RBGL.overview                     text    html    latex
Note: removing empty section \value in file 'astarSearch.Rd'
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  astarSearch                       text    html    latex   example
Note: removing empty section \seealso in file 'bandwidth.Rd'
  bandwidth                         text    html    latex   example
  bccluster                         text    html    latex   example
  bellman.ford.sp                   text    html    latex   example
  betweenness                       text    html    latex   example
  bfs                               text    html    latex   example
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  biConnComp                        text    html    latex   example
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  boyerMyrvoldPlanarityTest         text    html    latex
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  chrobakPayneStraightLineDrawing   text    html    latex
  clusteringCoef                    text    html    latex   example
  clusteringCoefAppr                text    html    latex   example
Note: removing empty section \seealso in file 'coloring.Rd'
  coloring                          text    html    latex   example
  connectedComp                     text    html    latex   example
  dag.sp                            text    html    latex   example
  dijkstra.sp                       text    html    latex   example
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  dominatorTree                     text    html    latex   example
  edgeConn                          text    html    latex   example
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  edmondsMaxCardinalityMatching     text    html    latex
  extractPath                       text    html    latex   example
  floyd.warshall.all.pairs.sp       text    html    latex   example
Note: removing empty section \seealso in file 'gprofile.Rd'
  gprofile                          text    html    latex   example
  graphGenerator                    text    html    latex   example
  highlyConnSG                      text    html    latex   example
  incrConnComp                      text    html    latex   example
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  is.triangulated                   text    html    latex   example
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  isKuratowskiSubgraph              text    html    latex
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  isStraightLineDrawing             text    html    latex
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  isomorphism                       text    html    latex   example
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  johnson.all.pairs.sp              text    html    latex   example
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  kCliques                          text    html    latex   example
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  kCores                            text    html    latex   example
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  kolmogorovMaxFlow                 text    html    latex
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  lambdaSets                        text    html    latex   example
  layout                            text    html    latex   example
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  lengauerTarjanDominatorTree       text    html    latex
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  makeBiconnectedPlanar             text    html    latex
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  makeConnected                     text    html    latex
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  makeMaximalPlanar                 text    html    latex
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  maxClique                         text    html    latex   example
  maxFlow                           text    html    latex   example
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  maximumCycleRatio                 text    html    latex
  minCut                            text    html    latex   example
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  minimumCycleRatio                 text    html    latex
  mstree.kruskal                    text    html    latex   example
  mstree.prim                       text    html    latex   example
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  ordering                          text    html    latex   example
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  planarCanonicalOrdering           text    html    latex
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  planarFaceTraversal               text    html    latex
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  removeSelfLoops                   text    html    latex   example
  separates                         text    html    latex   example
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  sloanStartEndVertices             text    html    latex
  sp.between                        text    html    latex   example
  strongComp                        text    html    latex   example
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  transClosure                      text    html    latex   example
  transitivity                      text    html    latex   example
  tsort                             text    html    latex   example
  wavefront                         text    html    latex   example
** building package indices ...
* DONE (RBGL)
* creating vignettes ... ERROR
Loading required package: graph
Loading required package: grid

Attaching package: 'XML'


	The following object(s) are masked from package:graph :

	 addNode 


 *** caught bus error ***
address 0x0, cause 'non-existent physical address'
aborting ...