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Package 189/319HostnameOS / ArchBUILDCHECKBUILD BIN
MEDME 1.4.0
Mattia Pelizzola
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/MEDME
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: MEDME
Version: 1.4.0
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD check --no-vignettes MEDME_1.4.0.tar.gz
StartedAt: 2009-10-20 17:03:59 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 17:05:52 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 112.6 seconds
RetCode: 0
Status: OK
CheckDir: MEDME.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/MEDME.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MEDME/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MEDME' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MEDME' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

MEDME.Rcheck/00install.out:

* Installing *source* package 'MEDME' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c MEDMEweight.c -o MEDMEweight.o
MEDMEweight.c: In function 'MEDMEweight':
MEDMEweight.c:36: warning: 'Max' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'Min' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'E' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'D' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'C' may be used uninitialized in this function
MEDMEweight.c:36: warning: 'B' may be used uninitialized in this function
MEDMEweight.c:30: warning: 'weight' may be used uninitialized in this function
gcc -std=gnu99 -shared -L/usr/local/lib64 -o MEDME.so MEDMEweight.o -L/home/biocbuild/bbs-2.4-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: alr3

Attaching package: 'alr3'


	The following object(s) are masked from package:MASS :

	 forbes 

Loading required package: lattice
Loading required package: magic
Loading required package: abind
Loading required package: nlme
Loading required package: plotrix

'drc' has been loaded.

Please cite R and 'drc' if used for a publication,
for references type 'citation()' and 'citation('drc')'.


Attaching package: 'drc'


	The following object(s) are masked from package:stats :

	 getInitial 

** help
*** installing help indices
 >>> Building/Updating help pages for package 'MEDME'
     Formats: text html latex example 
  CGcount                           text    html    latex   example
  MEDME                             text    html    latex   example
  MEDME.readFiles                   text    html    latex
  MEDME.writeFiles                  text    html    latex
  MEDMEset-class                    text    html    latex   example
  predict                           text    html    latex   example
  smooth                            text    html    latex   example
  testMEDMEset                      text    html    latex
** building package indices ...
* DONE (MEDME)