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Package 155/319HostnameOS / ArchBUILDCHECKBUILD BIN
ITALICS 2.4.0
Guillem Rigaill
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/ITALICS
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: ITALICS
Version: 2.4.0
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD build ITALICS
StartedAt: 2009-10-20 14:43:51 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 14:44:26 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 34.4 seconds
RetCode: 0
Status: OK
PackageFile: ITALICS_2.4.0.tar.gz
PackageFileSize: 342.8 KiB

Command output

* checking for file 'ITALICS/DESCRIPTION' ... OK
* preparing 'ITALICS':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'ITALICS' ...
** R
** inst
** preparing package for lazy loading
[1] "Have fun with GLAD"
[1] "For smoothing it is possible to use either"
[1] "the AWS algorithm (Polzehl and Spokoiny, 2002)"
[1] "or the HaarSeg algorithm (Ben-Yaacov and Eldar, 2008)"
[1] ""
[1] "If you use the package with AWS, please cite:"
[1] "Hupe et al. (2004) and Polzehl and Spokoiny (2002)"
[1] ""
[1] "If you use the package with HaarSeg, please cite:"
[1] "Hupe et al. (2004) and (Ben-Yaacov and Eldar, 2008)"
Loading required package: oligoClasses
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: preprocessCore
Welcome to oligo version 1.8.3
Loading required package: RSQLite
Loading required package: DBI
** help
*** installing help indices
 >>> Building/Updating help pages for package 'ITALICS'
     Formats: text html latex example 
Note: ignoring empty \keyword entries in file 'GLAD.GLAD.Rd'
  GLAD.GLAD                         text    html    latex
Note: ignoring empty \keyword entries in file 'ITALICSNew.Rd'
  ITALICSNew                        text    html    latex   example
Note: ignoring empty \keyword entries in file 'ITALICSTrain.Rd'
  ITALICSTrain                      text    html    latex
Note: ignoring empty \keyword entries in file 'Model.GetConfDat.Rd'
  Model.GetConfDat                  text    html    latex
Note: ignoring empty \keyword entries in file 'Model.GetCorrection.Rd'
  Model.GetCorrection               text    html    latex
Note: ignoring empty \keyword entries in file 'Model.GetEffet.Rd'
  Model.GetEffet                    text    html    latex
Note: ignoring empty \keyword entries in file 'Model.GetModel.Rd'
  Model.GetModel                    text    html    latex
Note: ignoring empty \keyword entries in file 'Model.GetResidu.Rd'
  Model.GetResidu                   text    html    latex
Note: ignoring empty \keyword entries in file 'New.AddInfo.Rd'
  New.AddInfo                       text    html    latex
Note: ignoring empty \keyword entries in file 'New.fromQuartetToSnp.Rd'
Note: removing empty section \examples in file 'New.fromQuartetToSnp.Rd'
  New.fromQuartetToSnp              text    html    latex
Note: ignoring empty \keyword entries in file 'New.fromSnpToQuartet.Rd'
  New.fromSnpToQuartet              text    html    latex
Note: ignoring empty \keyword entries in file 'New.getQuartet.Rd'
  New.getQuartet                    text    html    latex
Note: ignoring empty \keyword entries in file 'New.getSnpInfo.Rd'
  New.getSnpInfo                    text    html    latex
Note: ignoring empty \keyword entries in file 'New.readQuartetCopyNb.Rd'
  New.readQuartetCopyNb             text    html    latex
** building package indices ...
* DONE (ITALICS)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'ITALICS_2.4.0.tar.gz'