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Package 130/319HostnameOS / ArchBUILDCHECKBUILD BIN
GlobalAncova 3.10.0
R. Meister
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/GlobalAncova
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: GlobalAncova
Version: 3.10.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD INSTALL --build --library=GlobalAncova.buildbin-libdir GlobalAncova_3.10.0.tar.gz
StartedAt: 2009-10-20 19:01:24 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 19:01:46 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 21.2 seconds
RetCode: 0
Status: OK
PackageFile: GlobalAncova_3.10.0.zip
PackageFileSize: 1.069 MiB

Command output

* Installing *source* package 'GlobalAncova' ...

  Using auto-selected zip options '--use-zip-data '

** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c GlobalAncova.c -o GlobalAncova.o
GlobalAncova.c: In function 'permut':
GlobalAncova.c:268: warning: 'ord_perm' may be used uninitialized in this function
GlobalAncova.c: In function 'permut_withFperm':
GlobalAncova.c:166: warning: 'ord_perm' may be used uninitialized in this function
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c ludcmp.c -o ludcmp.o
ludcmp.c:232:24: warning: no newline at end of file
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c matrix.c -o matrix.o
gcc -shared -s -o GlobalAncova.dll tmp.def GlobalAncova.o ludcmp.o matrix.o -LE:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
  In method for function "pGAapprox": formal arguments in method and function do not appear in the same order
Warning in rematchDefinition(definition, fdef, mnames, fnames, signature) :
  Arguments of method and generic are not in the same order
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
  In method for function "GlobalAncova.closed": formal arguments in method and function do not appear in the same order
Warning in rematchDefinition(definition, fdef, mnames, fnames, signature) :
  Arguments of method and generic are not in the same order
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
  In method for function "Plot.genes": formal arguments in method and function do not appear in the same order
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
  In method for function "Plot.subjects": formal arguments in method and function do not appear in the same order
** help
*** installing help indices
 >>> Building/Updating help pages for package 'GlobalAncova'
     Formats: text html latex example chm 
  GAGO                              text    html    latex   example chm
  GlobalAncova-methods              text    html    latex           chm
  GlobalAncova                      text    html    latex   example chm
  GlobalAncova.closed-methods       text    html    latex           chm
  GlobalAncova.closed               text    html    latex           chm
  GlobalAncova.decomp               text    html    latex   example chm
  Plot.all                          text    html    latex   example chm
  Plot.genes-methods                text    html    latex           chm
  Plot.genes                        text    html    latex   example chm
  Plot.sequential                   text    html    latex   example chm
  Plot.subjects-methods             text    html    latex           chm
  Plot.subjects                     text    html    latex   example chm
  colon.normal                      text    html    latex   example chm
  colon.pheno                       text    html    latex   example chm
  colon.tumour                      text    html    latex   example chm
  pair.compare                      text    html    latex   example chm
  pathways                          text    html    latex   example chm
  phenodata                         text    html    latex   example chm
  vantVeer                          text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpvegqWf\R.INSTALL678418be\GlobalAncova\chm\GlobalAncova.chm





Compile time: 0 minutes, 2 seconds

20	Topics

87	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpvegqWf\R.INSTALL678418be\GlobalAncova\chm\GlobalAncova.chm, 45,443 bytes

Compression decreased file by 51,440 bytes.

** building package indices ...
** MD5 sums
packaged installation of 'GlobalAncova' as GlobalAncova_3.10.0.zip
* DONE (GlobalAncova)