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Package 128/319HostnameOS / ArchBUILDCHECKBUILD BIN
GGtools 3.2.0
Vince Carey
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/GGtools
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: GGtools
Version: 3.2.0
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD check --no-vignettes GGtools_3.2.0.tar.gz
StartedAt: 2009-10-20 16:27:28 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 16:32:04 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 276.2 seconds
RetCode: 0
Status: OK
CheckDir: GGtools.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/GGtools.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GGtools/DESCRIPTION' ... OK
* this is package 'GGtools' version '3.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GGtools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

GGtools.Rcheck/00install.out:

* Installing *source* package 'GGtools' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: GSEABase
Loading required package: AnnotationDbi
Loading required package: annotate
Loading required package: graph
Loading required package: snpMatrix
Loading required package: survival
Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
Loading required package: IRanges

Attaching package: 'IRanges'


	The following object(s) are masked from package:base :

	 cbind,
	 duplicated,
	 order,
	 pmax,
	 pmax.int,
	 pmin,
	 pmin.int,
	 rank,
	 rbind,
	 rep.int,
	 sapply,
	 sort,
	 table,
	 unique 


Attaching package: 'Biostrings'


	The following object(s) are masked from package:graph :

	 complement 

Loading required package: GO.db
Loading required package: KEGG.db
** help
*** installing help indices
 >>> Building/Updating help pages for package 'GGtools'
     Formats: text html latex example 
  GGtools-package                   text    html    latex
  aafSNP-class                      text    html    latex   example
  cisSnpTests                       text    html    latex   example
  gwSnpTests                        text    html    latex   example
  hbTestResults-class               text    html    latex   example
  hbTests-methods                   text    html    latex   example
  hla2set                           text    html    latex   example
  hmceuB36.2021                     text    html    latex   example
  invokePhase-methods               text    html    latex   example
  masterSnps                        text    html    latex   example
  plot-methods                      text    html    latex
  snpm2mapLD                        text    html    latex   example
  snpm2phase                        text    html    latex   example
  strMultPop                        text    html    latex   example
  topSnps-methods                   text    html    latex
  trackSet-methods                  text    html    latex
** building package indices ...
* DONE (GGtools)