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Package 80/319HostnameOS / ArchBUILDCHECKBUILD BIN
DNAcopy 1.18.0
Venkatraman E. Seshan
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/DNAcopy
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: DNAcopy
Version: 1.18.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes DNAcopy_1.18.0.tar.gz
StartedAt: 2009-10-20 16:48:14 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 16:48:47 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 33.9 seconds
RetCode: 0
Status: OK
CheckDir: DNAcopy.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/DNAcopy.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DNAcopy/DESCRIPTION' ... OK
* this is package 'DNAcopy' version '1.18.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'DNAcopy' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

DNAcopy.Rcheck/00install.out:

* Installing *source* package 'DNAcopy' ...
** libs
  making DLL ...
gfortran     -O3  -c cbsWtstats.f -o cbsWtstats.o
gfortran     -O3  -c cbststats.f -o cbststats.o
gfortran     -O3  -c changepoints-wtd.f -o changepoints-wtd.o
gfortran     -O3  -c changepoints.f -o changepoints.o
gfortran     -O3  -c esegment.f -o esegment.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c flchoose.c -o flchoose.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c fphyper.c -o fphyper.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c fpnorm.c -o fpnorm.o
gfortran     -O3  -c getbdry.f -o getbdry.o
gfortran     -O3  -c prune.f -o prune.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c rshared.c -o rshared.o
gfortran     -O3  -c segmentp.f -o segmentp.o
gfortran     -O3  -c tailprobs.f -o tailprobs.o
gcc -shared -s -o DNAcopy.dll tmp.def cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o tailprobs.o -lgfortran -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** data
**  moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'DNAcopy'
     Formats: text html latex example chm 
  CNA                               text    html    latex   example chm
  DNAcopy-internal                  text    html    latex           chm
  DNAcopy                           text    html    latex           chm
  coriell                           text    html    latex           chm
  cytoBand                          text    html    latex           chm
  exon.segment                      text    html    latex   example chm
  getbdry                           text    html    latex           chm
  plot.DNAcopy                      text    html    latex   example chm
  segment                           text    html    latex   example chm
  segments.p                        text    html    latex   example chm
  segments.summary                  text    html    latex   example chm
  smooth.CNA                        text    html    latex   example chm
  subset.CNA                        text    html    latex   example chm
  subset.DNAcopy                    text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\DNACOP~1.RCH\00_PKG~1\DNAcopy\chm\DNAcopy.chm


Compile time: 0 minutes, 0 seconds
15	Topics
30	Local links
1	Internet link
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\DNACOP~1.RCH\00_PKG~1\DNAcopy\chm\DNAcopy.chm, 36,012 bytes
Compression decreased file by 15,716 bytes.
** building package indices ...
** MD5 sums
* DONE (DNAcopy)