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Package 8/319HostnameOS / ArchBUILDCHECKBUILD BIN
AffyCompatible 1.4.0
Martin Morgan
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/AffyCompatible
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: AffyCompatible
Version: 1.4.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes AffyCompatible_1.4.0.tar.gz
StartedAt: 2009-10-20 15:57:02 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 16:01:06 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 244.2 seconds
RetCode: 0
Status: OK
CheckDir: AffyCompatible.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/AffyCompatible.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AffyCompatible/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'AffyCompatible' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AffyCompatible' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

AffyCompatible.Rcheck/00install.out:

* Installing *source* package 'AffyCompatible' ...
** R
** inst
** preparing package for lazy loading
Loading required package: bitops
Warning in grep("(http|ftp)://", extId, useBytes = TRUE) :
  argument 'useBytes = TRUE' will be ignored
Warning in grep("(http|ftp)://", extId, useBytes = TRUE) :
  argument 'useBytes = TRUE' will be ignored
Warning in grep("(http|ftp)://", extId, useBytes = TRUE) :
  argument 'useBytes = TRUE' will be ignored
** help
*** installing help indices
 >>> Building/Updating help pages for package 'AffyCompatible'
     Formats: text html latex example chm 
  AffyCompatible-class              text    html    latex   example chm
  AffyCompatible-package            text    html    latex           chm
  NetAffxResource-class             text    html    latex   example chm
  NetAffxResource                   text    html    latex           chm
  accessors-NetAffxResource         text    html    latex           chm
  readArr                           text    html    latex   example chm
  readMage                          text    html    latex   example chm
  readNetAffx                       text    html    latex   example chm
  readXml                           text    html    latex   example chm
  xclass                            text    html    latex   example chm
  zzz-.TypedAssociation-class       text    html    latex           chm
  zzz-ARRCompatibility-class        text    html    latex   example chm
  zzz-DTTCompatibility-class        text    html    latex   example chm
  zzz-NetAffxCompatibility-class    text    html    latex   example chm
  zzz                               text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\AFFYCO~2.RCH\00_PKG~1\AFFYCO~1\chm\AffyCompatible.chm


Compile time: 0 minutes, 3 seconds
16	Topics
2,132	Local links
1	Internet link
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\AFFYCO~2.RCH\00_PKG~1\AFFYCO~1\chm\AffyCompatible.chm, 104,931 bytes
Compression decreased file by 858,861 bytes.
** building package indices ...
** MD5 sums
* DONE (AffyCompatible)