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Package 3/319HostnameOS / ArchBUILDCHECKBUILD BIN
ACME 1.10.0
Sean Davis
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/ACME
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: ACME
Version: 1.10.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes ACME_1.10.0.tar.gz
StartedAt: 2009-10-20 15:51:21 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 15:52:41 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 80.6 seconds
RetCode: 0
Status: OK
CheckDir: ACME.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/ACME.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ACME/DESCRIPTION' ... OK
* this is package 'ACME' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ACME' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
findClosestGene: no visible binding for '<<-' assignment to 'refflat'
findClosestGene: no visible binding for global variable 'refflat'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

ACME.Rcheck/00install.out:

* Installing *source* package 'ACME' ...
** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c windowChisq.c -o windowChisq.o
windowChisq.c: In function 'windowChisq':
windowChisq.c:58: warning: suggest parentheses around comparison in operand of &
windowChisq.c:63: warning: suggest parentheses around comparison in operand of &
windowChisq.c:21: warning: unused variable 'xa'
windowChisq.c: At top level:
windowChisq.c:86: warning: initialization from incompatible pointer type
gcc -shared -s -o ACME.dll tmp.def windowChisq.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "print" in "ACME"
Creating a new generic function for "plot" in "ACME"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'ACME'
     Formats: text html latex example chm 
  aGFF-class                        text    html    latex   example chm
  aGFFCalc-class                    text    html    latex   example chm
  do.aGFF.calc                      text    html    latex   example chm
  example.agff                      text    html    latex   example chm
  findClosestGene                   text    html    latex   example chm
  findRegions                       text    html    latex   example chm
  getRefflat                        text    html    latex   example chm
  read.resultsGFF                   text    html    latex   example chm
  write.sgr                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\ACME~1.RCH\00_PKG~1\ACME\chm\ACME.chm


Compile time: 0 minutes, 0 seconds
10	Topics
33	Local links
0	Internet links
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\ACME~1.RCH\00_PKG~1\ACME\chm\ACME.chm, 26,359 bytes
Compression decreased file by 4,484 bytes.
** building package indices ...
** MD5 sums
* DONE (ACME)