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facsDorit 1.4.0
Florian Hahne
Snapshot Date: 2009-04-10 00:03:00 -0700 (Fri, 10 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/facsDorit
Last Changed Rev: 142 / Revision: 760
Last Changed Date: 2006-09-28 18:17:09 -0700 (Thu, 28 Sep 2006)
wilson2 Linux (openSUSE 10.3) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK [ WARNINGS ] OK 
Package: facsDorit
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes facsDorit_1.4.0.tar.gz
StartedAt: 2009-04-10 01:43:58 -0700 (Fri, 10 Apr 2009)
EndedAt: 2009-04-10 01:45:07 -0700 (Fri, 10 Apr 2009)
EllapsedTime: 68.8 seconds
RetCode: 0
Status: WARNINGS
CheckDir: facsDorit.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-data-experiment/meat/facsDorit.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'facsDorit/DESCRIPTION' ... OK
* this is package 'facsDorit' version '1.4.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'facsDorit' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... WARNING
Found the following file(s) with non-portable file names:
  inst/extdata/map/060304MAPK controls.A01
  inst/extdata/map/060304MAPK controls.A02
  inst/extdata/map/060304MAPK controls.A03
  inst/extdata/map/060304MAPK controls.A04
  inst/extdata/map/060304MAPK controls.A05
  inst/extdata/map/060304MAPK controls.A06
  inst/extdata/map/060304MAPK controls.A07
  inst/extdata/map/060304MAPK controls.A08
  inst/extdata/map/060304MAPK controls.A09
  inst/extdata/map/060304MAPK controls.A10
  inst/extdata/map/060304MAPK controls.A11
  inst/extdata/map/060304MAPK controls.A12
  inst/extdata/map/060304MAPK controls.B01
  inst/extdata/map/060304MAPK controls.B02
  inst/extdata/map/060304MAPK controls.B03
  inst/extdata/map/060304MAPK controls.B04
  inst/extdata/map/060304MAPK controls.B05
  inst/extdata/map/060304MAPK controls.B06
  inst/extdata/map/060304MAPK controls.B07
  inst/extdata/map/060304MAPK controls.B08
  inst/extdata/map/060304MAPK controls.B09
  inst/extdata/map/060304MAPK controls.B10
  inst/extdata/map/060304MAPK controls.B11
  inst/extdata/map/060304MAPK controls.B12
  inst/extdata/map/060304MAPK controls.C01
  inst/extdata/map/060304MAPK controls.C02
  inst/extdata/map/060304MAPK controls.C03
  inst/extdata/map/060304MAPK controls.C04
  inst/extdata/map/060304MAPK controls.C05
  inst/extdata/map/060304MAPK controls.C06
  inst/extdata/map/060304MAPK controls.C07
  inst/extdata/map/060304MAPK controls.C08
  inst/extdata/map/060304MAPK controls.C09
  inst/extdata/map/060304MAPK controls.C10
  inst/extdata/map/060304MAPK controls.C11
  inst/extdata/map/060304MAPK controls.C12
  inst/extdata/map/060304MAPK controls.D01
  inst/extdata/map/060304MAPK controls.D02
  inst/extdata/map/060304MAPK controls.D03
  inst/extdata/map/060304MAPK controls.D04
  inst/extdata/map/060304MAPK controls.D05
  inst/extdata/map/060304MAPK controls.D06
  inst/extdata/map/060304MAPK controls.D07
  inst/extdata/map/060304MAPK controls.D08
  inst/extdata/map/060304MAPK controls.D09
  inst/extdata/map/060304MAPK controls.D10
  inst/extdata/map/060304MAPK controls.D11
  inst/extdata/map/060304MAPK controls.D12
  inst/extdata/map/060304MAPK controls.E01
  inst/extdata/map/060304MAPK controls.E02
  inst/extdata/map/060304MAPK controls.E03
  inst/extdata/map/060304MAPK controls.E04
  inst/extdata/map/060304MAPK controls.E05
  inst/extdata/map/060304MAPK controls.E06
  inst/extdata/map/060304MAPK controls.E07
  inst/extdata/map/060304MAPK controls.E08
  inst/extdata/map/060304MAPK controls.E09
  inst/extdata/map/060304MAPK controls.E10
  inst/extdata/map/060304MAPK controls.E11
  inst/extdata/map/060304MAPK controls.E12
  inst/extdata/map/060304MAPK controls.F01
  inst/extdata/map/060304MAPK controls.F02
  inst/extdata/map/060304MAPK controls.F03
  inst/extdata/map/060304MAPK controls.F04
  inst/extdata/map/060304MAPK controls.F05
  inst/extdata/map/060304MAPK controls.F06
  inst/extdata/map/060304MAPK controls.F07
  inst/extdata/map/060304MAPK controls.F08
  inst/extdata/map/060304MAPK controls.F09
  inst/extdata/map/060304MAPK controls.F10
  inst/extdata/map/060304MAPK controls.F11
  inst/extdata/map/060304MAPK controls.F12
  inst/extdata/map/060304MAPK controls.G01
  inst/extdata/map/060304MAPK controls.G02
  inst/extdata/map/060304MAPK controls.G03
  inst/extdata/map/060304MAPK controls.G04
  inst/extdata/map/060304MAPK controls.G05
  inst/extdata/map/060304MAPK controls.G06
  inst/extdata/map/060304MAPK controls.G07
  inst/extdata/map/060304MAPK controls.G08
  inst/extdata/map/060304MAPK controls.G09
  inst/extdata/map/060304MAPK controls.G10
  inst/extdata/map/060304MAPK controls.G11
  inst/extdata/map/060304MAPK controls.G12
  inst/extdata/map/060304MAPK controls.H01
  inst/extdata/map/060304MAPK controls.H02
  inst/extdata/map/060304MAPK controls.H03
  inst/extdata/map/060304MAPK controls.H04
  inst/extdata/map/060304MAPK controls.H05
  inst/extdata/map/060304MAPK controls.H06
  inst/extdata/map/060304MAPK controls.H07
  inst/extdata/map/060304MAPK controls.H08
  inst/extdata/map/060304MAPK controls.H09
  inst/extdata/map/060304MAPK controls.H10
  inst/extdata/map/060304MAPK controls.H11
  inst/extdata/map/060304MAPK controls.H12
These are not fully portable file names
See section 'Package structure' in manual 'Writing R Extensions'.
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating facsDorit-Ex.R ... OK
* checking examples ... OK
* creating facsDorit-manual.tex ... OK
* checking facsDorit-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/bbs-2.3-data-experiment/meat/facsDorit.Rcheck/00check.log
for details

facsDorit.Rcheck/00install.out:

* Installing *source* package 'facsDorit' ...
** R
** inst
** preparing package for lazy loading
Loading required package: prada
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 0.5-01)
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
** help
 >>> Building/Updating help pages for package 'facsDorit'
     Formats: text html latex example 
Note: ignoring empty \keyword entries in file 'facsDorit.Rd'
Note: removing empty section \references in file 'facsDorit.Rd'
  facsDorit                         text    html    latex   example
** building package indices ...
* DONE (facsDorit)