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Package 294/294HostnameOS / ArchBUILDCHECKBUILD BIN
yaqcaffy 1.2.0
Laurent Gatto
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/yaqcaffy
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: yaqcaffy
Version: 1.2.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes yaqcaffy_1.2.0.tar.gz
StartedAt: 2009-04-18 20:16:40 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 20:19:55 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 194.2 seconds
RetCode: 0
Status: OK
CheckDir: yaqcaffy.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/yaqcaffy.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'yaqcaffy/DESCRIPTION' ... OK
* this is package 'yaqcaffy' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'yaqcaffy' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating yaqcaffy-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating yaqcaffy-manual.tex ... OK
* checking yaqcaffy-manual.tex using pdflatex ... OK

yaqcaffy.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/yaqcaffy.Rcheck


---------- Making package yaqcaffy ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package yaqcaffy for lazy loading
Loading required package: simpleaffy
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: gcrma
Loading required package: matchprobes
Loading required package: geneplotter
Loading required package: lattice
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
KernSmooth 2.22 installed
Copyright M. P. Wand 1997

Attaching package: 'geneplotter'


	The following object(s) are masked from package:lattice :

	 panel.smoothScatter 

Creating a new generic function for "merge" in "yaqcaffy"
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'yaqcaffy'
     Formats: text html latex example chm 
  YAQCStats-accessor                text    html    latex           chm
  YAQCStats-class                   text    html    latex           chm
  getAllInt                         text    html    latex   example chm
  getBioProbes                      text    html    latex   example chm
  getOutliers                       text    html    latex   example chm
  getQCRatios                       text    html    latex   example chm
  getRatioProbes                    text    html    latex   example chm
  getSpikeProbes                    text    html    latex   example chm
  morespikes                        text    html    latex           chm
  reprodPlot                        text    html    latex   example chm
  yaqc-methods                      text    html    latex           chm
  yaqc.affy                         text    html    latex   example chm
  yaqc.plot                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\yaqcaffy.Rcheck\00_pkg_src\yaqcaffy\chm\yaqcaffy.chm


Compile time: 0 minutes, 0 seconds
14	Topics
54	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\yaqcaffy.Rcheck\00_pkg_src\yaqcaffy\chm\yaqcaffy.chm, 29,447 bytes
Compression decreased file by 17,852 bytes.
  adding MD5 sums

* DONE (yaqcaffy)