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Package 271/294HostnameOS / ArchBUILDCHECKBUILD BIN
splicegear 1.14.0
Laurent Gautier
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/splicegear
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: splicegear
Version: 1.14.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes splicegear_1.14.0.tar.gz
StartedAt: 2009-04-18 20:06:12 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 20:07:17 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 64.7 seconds
RetCode: 0
Status: OK
CheckDir: splicegear.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/splicegear.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'splicegear/DESCRIPTION' ... OK
* this is package 'splicegear' version '1.14.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'splicegear' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating splicegear-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating splicegear-manual.tex ... OK
* checking splicegear-manual.tex using pdflatex ... OK

splicegear.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/splicegear.Rcheck


---------- Making package splicegear ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  preparing package splicegear for lazy loading
Loading required package: grid
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: XML
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'splicegear'
     Formats: text html latex example chm 
  Probes-class                      text    html    latex   example chm
  SpliceExprSet-class               text    html    latex   example chm
  SpliceSites-class                 text    html    latex   example chm
  SpliceSitesGenomic-class          text    html    latex   example chm
  as.data.frame.SpliceExprSet       text    html    latex   example chm
  barplot.SpliceSites               text    html    latex   example chm
  buildSpliceSites                  text    html    latex   example chm
  getRelSignStrength                text    html    latex   example chm
  grid.helpers                      text    html    latex           chm
  grid.plot.SpliceSites             text    html    latex   example chm
Note: removing empty section \details in file 'isProbeOnSpliceSite.Rd'
Note: removing empty section \examples in file 'isProbeOnSpliceSite.Rd'
Note: removing empty section \details in file 'isProbeOnSpliceSite.Rd'
Note: removing empty section \examples in file 'isProbeOnSpliceSite.Rd'
  isProbeOnSpliceSite               text    html    latex           chm
  matchprobes2Probes                text    html    latex           chm
  plot.SpliceExprSet                text    html    latex   example chm
  plot.SpliceSites                  text    html    latex   example chm
  plot.SpliceSitesGenomic           text    html    latex   example chm
Note: removing empty section \details in file 'sort.SpliceExprSet.Rd'
Note: removing empty section \details in file 'sort.SpliceExprSet.Rd'
  sort.SpliceExprSet                text    html    latex   example chm
Note: removing empty section \source in file 'spliceset.Rd'
Note: removing empty section \source in file 'spliceset.Rd'
  spliceset                         text    html    latex   example chm
  split.SpliceSites                 text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\splicegear.Rcheck\00_pkg_src\splicegear\chm\splicegear.chm


Compile time: 0 minutes, 0 seconds
19	Topics
105	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\splicegear.Rcheck\00_pkg_src\splicegear\chm\splicegear.chm, 36,621 bytes
Compression decreased file by 38,923 bytes.
  adding MD5 sums

* DONE (splicegear)