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Package 258/294HostnameOS / ArchBUILDCHECKBUILD BIN
siggenes 1.16.0
Holger Schwender
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/siggenes
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: siggenes
Version: 1.16.0
Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD check --no-vignettes siggenes_1.16.0.tar.gz
StartedAt: 2009-04-18 16:40:58 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 16:41:30 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 32.5 seconds
RetCode: 0
Status: OK
CheckDir: siggenes.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/siggenes.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'siggenes/DESCRIPTION' ... OK
* this is package 'siggenes' version '1.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'siggenes' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
buildSNPannotation: no visible global function definition for ‘db’
buildSNPannotation: no visible global function definition for
  ‘dbListFields’
buildSNPannotation: no visible global function definition for
  ‘dbGetQuery’
filterALL: no visible global function definition for ‘filterALL2’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating siggenes-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating siggenes-manual.tex ... OK
* checking siggenes-manual.tex using pdflatex ... OK

siggenes.Rcheck/00install.out:

* Installing *source* package 'siggenes' ...
** R
** inst
** preparing package for lazy loading
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: splines
Creating a new generic function for "print" in "siggenes"
Creating a new generic function for "identify" in "siggenes"
** help
 >>> Building/Updating help pages for package 'siggenes'
     Formats: text html latex example 
  EBAM-class                        text    html    latex   example
  FindA0-class                      text    html    latex
  SAM-class                         text    html    latex   example
  buildSNPannotation                text    html    latex
  cat.ebam                          text    html    latex
  cat.stat                          text    html    latex
  d.stat                            text    html    latex
  delta.plot                        text    html    latex   example
  denspr                            text    html    latex
  ebam                              text    html    latex   example
  find.a0                           text    html    latex   example
  findDelta                         text    html    latex
  fudge2                            text    html    latex
  help.ebam                         text    html    latex   example
  help.finda0                       text    html    latex   example
  help.sam                          text    html    latex   example
  link.genes                        text    html    latex
  link.siggenes                     text    html    latex
  list.siggenes                     text    html    latex   example
  nclass.wand                       text    html    latex
  pi0.est                           text    html    latex   example
  plotArguments                     text    html    latex
  plotFindArguments                 text    html    latex
  qvalue.cal                        text    html    latex   example
  rowWilcoxon                       text    html    latex
  sam                               text    html    latex   example
  sam.plot2                         text    html    latex   example
  shortenGeneDescription            text    html    latex
  siggenes-internal                 text    html    latex
  siggenes2excel                    text    html    latex
  siggenes2html                     text    html    latex
  sumSAM-class                      text    html    latex
  wilc.ebam                         text    html    latex
  wilc.stat                         text    html    latex
  z.ebam                            text    html    latex
** building package indices ...
* DONE (siggenes)