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Package 212/294HostnameOS / ArchBUILDCHECKBUILD BIN
plier 1.12.0
Crispin Miller
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/plier
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: plier
Version: 1.12.0
Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD check --no-vignettes plier_1.12.0.tar.gz
StartedAt: 2009-04-18 16:20:28 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 16:20:47 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 19.5 seconds
RetCode: 0
Status: OK
CheckDir: plier.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/plier.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'plier/DESCRIPTION' ... OK
* this is package 'plier' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plier' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating plier-Ex.R ... OK
* checking examples ... OK
* creating plier-manual.tex ... OK
* checking plier-manual.tex using pdflatex ... OK

plier.Rcheck/00install.out:

* Installing *source* package 'plier' ...
** libs
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c affyplier.cpp -o affyplier.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c plieralg.cpp -o plieralg.o
plieralg.cpp: In function ‘long int NewtonPlier(plier_data*, double&)’:
plieralg.cpp:910: warning: ‘LogLikelihood’ may be used uninitialized in this function
plieralg.cpp: At global scope:
plieralg.cpp:49: warning: ‘g_ErrorCode’ defined but not used
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c plier_impl.cpp -o plier_impl.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c rwrapper.cpp -o rwrapper.o
g++ -shared -L/usr/local/lib64 -o plier.so affyplier.o plieralg.o plier_impl.o rwrapper.o   -L/home/biocbuild/bbs-2.3-bioc/R/lib -lR
** R
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
 >>> Building/Updating help pages for package 'plier'
     Formats: text html latex example 
Note: removing empty section \examples in file 'justPlier.Rd'
  justPlier                         text    html    latex
** building package indices ...
* DONE (plier)