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Package 211/294HostnameOS / ArchBUILDCHECKBUILD BIN
plgem 1.14.0
Mattia Pelizzola
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/plgem
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: plgem
Version: 1.14.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes plgem_1.14.0.tar.gz
StartedAt: 2009-04-18 19:40:28 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 19:41:49 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 80.9 seconds
RetCode: 0
Status: OK
CheckDir: plgem.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/plgem.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'plgem/DESCRIPTION' ... OK
* this is package 'plgem' version '1.14.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plgem' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating plgem-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating plgem-manual.tex ... OK
* checking plgem-manual.tex using pdflatex ... OK

plgem.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/plgem.Rcheck


---------- Making package plgem ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  preparing package plgem for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: MASS
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'plgem'
     Formats: text html latex example chm 
  LPSeset                           text    html    latex   example chm
  plgem.deg                         text    html    latex   example chm
  plgem.fit                         text    html    latex   example chm
  plgem.obsStn                      text    html    latex   example chm
  plgem.pValue                      text    html    latex   example chm
  plgem.write.summary               text    html    latex   example chm
  run.plgem                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\plgem.Rcheck\00_pkg_src\plgem\chm\plgem.chm


Compile time: 0 minutes, 0 seconds
8	Topics
54	Local links
13	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\plgem.Rcheck\00_pkg_src\plgem\chm\plgem.chm, 31,576 bytes
Compression decreased file by 13,448 bytes.
  adding MD5 sums

* DONE (plgem)