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Package 198/294HostnameOS / ArchBUILDCHECKBUILD BIN
pamr 1.40.1
Rob Tibshirani
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/pamr
Last Changed Rev: 38931 / Revision: 38965
Last Changed Date: 2009-04-17 09:17:15 -0700 (Fri, 17 Apr 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK [ OK ]
Package: pamr
Version: 1.40.1
Command: /Users/biocbuild/BBS/utils/build-universal.sh pamr_1.40.1.tar.gz /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R pamr.buildbin-libdir
StartedAt: 2009-04-18 18:55:19 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 18:55:27 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 8.1 seconds
RetCode: 0
Status: OK
PackageFile: pamr_1.40.1.tgz
PackageFileSize: 1.241 MiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --library=pamr.buildbin-libdir pamr_1.40.1.tar.gz'

* Installing *source* package 'pamr' ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c cox_func.c -o cox_func.o
gfortran-4.2 -arch i386   -fPIC  -g -O2 -Wall -c knnimpute.f -o knnimpute.o
knnimpute.f: In function 'twomis':
knnimpute.f:132: warning: 'dold' may be used uninitialized in this function
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pamr.so cox_func.o knnimpute.o  -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c cox_func.c -o cox_func.o
gfortran-4.2 -arch ppc   -fPIC  -g -O2 -Wall -c knnimpute.f -o knnimpute.o
knnimpute.f: In function 'twomis':
knnimpute.f:132: warning: 'dold' may be used uninitialized in this function
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pamr.so cox_func.o knnimpute.o  -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc64
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c cox_func.c -o cox_func.o
gfortran-4.2 -arch ppc64   -fPIC  -g -O2 -Wall -c knnimpute.f -o knnimpute.o
knnimpute.f: In function 'twomis':
knnimpute.f:132: warning: 'dold' may be used uninitialized in this function
gcc-4.2 -arch ppc64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pamr.so cox_func.o knnimpute.o  -lgfortran -lSystemStubs -L/Library/Frameworks/R.framework/Versions/2.8/Resources/lib/ppc64 -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Versions/2.8/Resources/lib/ppc64/libRblas.dylib -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c cox_func.c -o cox_func.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -c knnimpute.f -o knnimpute.o
knnimpute.f: In function 'twomis':
knnimpute.f:132: warning: 'dold' may be used uninitialized in this function
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pamr.so cox_func.o knnimpute.o  -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'pamr'
     Formats: text html latex example 
Note: removing empty section \source in file 'khan.Rd'
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  pamr.adaptthresh                  text    html    latex   example
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  pamr.batchadjust                  text    html    latex   example
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  pamr.confusion                    text    html    latex   example
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  pamr.cv                           text    html    latex   example
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  pamr.decorrelate                  text    html    latex   example
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  pamr.fdr                          text    html    latex   example
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  pamr.geneplot                     text    html    latex   example
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  pamr.indeterminate                text    html    latex   example
  pamr.internal                     text    html    latex
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  pamr.knnimpute                    text    html    latex
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  pamr.listgenes                    text    html    latex   example
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  pamr.makeclasses                  text    html    latex   example
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  pamr.menu                         text    html    latex   example
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  pamr.plotcen                      text    html    latex   example
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  pamr.plotcv                       text    html    latex   example
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  pamr.plotcvprob                   text    html    latex   example
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  pamr.plotfdr                      text    html    latex   example
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  pamr.plotstrata                   text    html    latex   example
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  pamr.plotsurvival                 text    html    latex   example
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  pamr.predict                      text    html    latex   example
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  pamr.predictmany                  text    html    latex   example
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  pamr.surv.to.class2               text    html    latex   example
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  pamr.test.errors.surv.compute     text    html    latex   example
Note: ignoring empty \keyword entries in file 'pamr.to.excel.Rd'
  pamr.to.excel                     text    html    latex
Note: ignoring empty \keyword entries in file 'pamr.train.Rd'
  pamr.train                        text    html    latex   example
** building package indices ...
* DONE (pamr)