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Package 175/294HostnameOS / ArchBUILDCHECKBUILD BIN
metaArray 1.16.0
Hyungwon Choi
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/metaArray
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386 [ OK ] OK  OK 
Package: metaArray
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD build metaArray
StartedAt: 2009-04-18 15:34:51 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 15:35:43 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 51.9 seconds
RetCode: 0
Status: OK
PackageFile: metaArray_1.16.0.tar.gz
PackageFileSize: 733 KiB

Command output

* checking for file 'metaArray/DESCRIPTION' ... OK
* preparing 'metaArray':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'metaArray' ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c contr.c -o contr.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c dproc.c -o dproc.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c dproc2.c -o dproc2.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c intcor.c -o intcor.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c lowess.c -o lowess.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c mmath.c -o mmath.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c perm.c -o perm.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c poe.c -o poe.o
poe.c: In function 'poe_one_iter':
poe.c:431: warning: suggest parentheses around comparison in operand of &
poe.c:437: warning: suggest parentheses around comparison in operand of &
poe.c:438: warning: suggest parentheses around comparison in operand of |
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o metaArray.so contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm  -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c contr.c -o contr.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c dproc.c -o dproc.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c dproc2.c -o dproc2.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c intcor.c -o intcor.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c lowess.c -o lowess.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c mmath.c -o mmath.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c perm.c -o perm.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c poe.c -o poe.o
poe.c: In function 'poe_one_iter':
poe.c:431: warning: suggest parentheses around comparison in operand of &
poe.c:437: warning: suggest parentheses around comparison in operand of &
poe.c:438: warning: suggest parentheses around comparison in operand of |
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o metaArray.so contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm  -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc64
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c contr.c -o contr.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c dproc.c -o dproc.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c dproc2.c -o dproc2.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c intcor.c -o intcor.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c lowess.c -o lowess.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c mmath.c -o mmath.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c perm.c -o perm.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c poe.c -o poe.o
poe.c: In function 'poe_one_iter':
poe.c:431: warning: suggest parentheses around comparison in operand of &
poe.c:437: warning: suggest parentheses around comparison in operand of &
poe.c:438: warning: suggest parentheses around comparison in operand of |
gcc-4.2 -arch ppc64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o metaArray.so contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm  -L/Library/Frameworks/R.framework/Versions/2.8/Resources/lib/ppc64 -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Versions/2.8/Resources/lib/ppc64/libRblas.dylib -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c contr.c -o contr.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c dproc.c -o dproc.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c dproc2.c -o dproc2.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c intcor.c -o intcor.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c lowess.c -o lowess.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c mmath.c -o mmath.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c perm.c -o perm.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include   -DUSEDOUBLE -fPIC  -g -O2 -Wall -c poe.c -o poe.o
poe.c: In function 'poe_one_iter':
poe.c:431: warning: suggest parentheses around comparison in operand of &
poe.c:437: warning: suggest parentheses around comparison in operand of &
poe.c:438: warning: suggest parentheses around comparison in operand of |
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o metaArray.so contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm  -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: MergeMaid
Loading required package: survival
Loading required package: splines
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: MASS
** help
 >>> Building/Updating help pages for package 'metaArray'
     Formats: text html latex example 
  Zscore                            text    html    latex   example
Note: removing empty section \examples in file 'em.draw.Rd'
  em.draw                           text    html    latex
Note: removing empty section \examples in file 'find.init.Rd'
  find.init                         text    html    latex
Note: removing empty section \examples in file 'fit.em.Rd'
  fit.em                            text    html    latex
  intcor                            text    html    latex   example
  logit                             text    html    latex
  mdata                             text    html    latex
Note: removing empty section \examples in file 'poe.em.Rd'
  poe.em                            text    html    latex
  poe.mcmc                          text    html    latex   example
** building package indices ...
* DONE (metaArray)
* creating vignettes ... OK
* cleaning src
* removing junk files
* excluding invalid files from 'metaArray'
Subdirectory 'man' contains invalid file names:
  README pkg.log
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'metaArray_1.16.0.tar.gz'