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Package 167/294HostnameOS / ArchBUILDCHECKBUILD BIN
marray 1.20.0
Yee Hwa (Jean) Yang
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/marray
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: marray
Version: 1.20.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes marray_1.20.0.tar.gz
StartedAt: 2009-04-18 19:18:32 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 19:20:08 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 96.2 seconds
RetCode: 0
Status: OK
CheckDir: marray.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/marray.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'marray/DESCRIPTION' ... OK
* this is package 'marray' version '1.20.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'marray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
findID: no visible binding for global variable 'gnames'
htmlPage: no visible binding for global variable 'Gnames'
maTwoSamples: no visible global function definition for 'gpTools'
scale.na: no visible global function definition for 'applyy'
widget.mapGeneInfo: no visible global function definition for
  'widgetRender'
widget.TwoSamples: no visible global function definition for
  'widgetRender'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating marray-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating marray-manual.tex ... OK
* checking marray-manual.tex using pdflatex ... OK

marray.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/marray.Rcheck


---------- Making package marray ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package marray for lazy loading
Loading required package: limma
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'marray'
     Formats: text html latex example chm 
  boxplot                           text    html    latex   example chm
  bracketMethods                    text    html    latex           chm
Note: removing empty section \value in file 'cbind.Rd'
Note: removing empty section \examples in file 'cbind.Rd'
Note: removing empty section \value in file 'cbind.Rd'
Note: removing empty section \examples in file 'cbind.Rd'
  cbind                             text    html    latex           chm
  checkTargetInfo                   text    html    latex   example chm
  coerce-methods                    text    html    latex           chm
  dim                               text    html    latex   example chm
  findID                            text    html    latex   example chm
  htmlPage                          text    html    latex   example chm
  image                             text    html    latex   example chm
  ma2D                              text    html    latex   example chm
  maBoxplot                         text    html    latex   example chm
  maColorBar                        text    html    latex   example chm
  maCompCoord                       text    html    latex   example chm
  maCompInd                         text    html    latex   example chm
Note: removing empty section \details in file 'maCompLayout.Rd'
Note: removing empty section \details in file 'maCompLayout.Rd'
  maCompLayout                      text    html    latex   example chm
  maCompNormA                       text    html    latex   example chm
  maCompPlate                       text    html    latex   example chm
  maCoord2Ind                       text    html    latex   example chm
  maDefaultPar                      text    html    latex   example chm
  maDotsDefaults                    text    html    latex   example chm
  maDotsMatch                       text    html    latex   example chm
  maGenControls                     text    html    latex   example chm
  maGeneTable                       text    html    latex   example chm
  maImage                           text    html    latex   example chm
  maImage.func                      text    html    latex   example chm
  maInd2Coord                       text    html    latex   example chm
  maLegendLines                     text    html    latex   example chm
  maLoess                           text    html    latex   example chm
  maLoessLines                      text    html    latex   example chm
  maMAD                             text    html    latex   example chm
  maMed                             text    html    latex   example chm
  maNA                              text    html    latex           chm
  maNorm                            text    html    latex   example chm
  maNorm2D                          text    html    latex   example chm
  maNormLoess                       text    html    latex   example chm
  maNormMAD                         text    html    latex   example chm
  maNormMain                        text    html    latex   example chm
  maNormMed                         text    html    latex   example chm
  maNormScale                       text    html    latex   example chm
  maNum2Logic                       text    html    latex   example chm
  maPalette                         text    html    latex   example chm
  maPlot                            text    html    latex   example chm
  maPlot.func                       text    html    latex   example chm
  maSelectGnames                    text    html    latex   example chm
  maText                            text    html    latex   example chm
  maTop                             text    html    latex   example chm
  maTwoSamples                      text    html    latex           chm
  mapGeneInfo                       text    html    latex   example chm
  marray-internal                   text    html    latex           chm
  marrayInfo-class                  text    html    latex   example chm
  marrayLayout-class                text    html    latex   example chm
  marrayNorm-class                  text    html    latex   example chm
  marrayRaw-class                   text    html    latex   example chm
  opVersionID                       text    html    latex   example chm
  plotMA                            text    html    latex   example chm
  print-methods                     text    html    latex           chm
  read.Galfile                      text    html    latex   example chm
Note: removing empty section \details in file 'read.marrayInfo.Rd'
Note: removing empty section \details in file 'read.marrayInfo.Rd'
  read.marrayInfo                   text    html    latex   example chm
Note: removing empty section \details in file 'read.marrayLayout.Rd'
Note: removing empty section \note in file 'read.marrayLayout.Rd'
Note: removing empty section \details in file 'read.marrayLayout.Rd'
Note: removing empty section \note in file 'read.marrayLayout.Rd'
  read.marrayLayout                 text    html    latex   example chm
Note: removing empty section \details in file 'read.marrayRaw.Rd'
Note: removing empty section \details in file 'read.marrayRaw.Rd'
  read.marrayRaw                    text    html    latex   example chm
  rm.na                             text    html    latex   example chm
Note: removing empty section \examples in file 'showLargeObject.Rd'
Note: removing empty section \examples in file 'showLargeObject.Rd'
  showLargeObject                   text    html    latex           chm
  stat.confband.text                text    html    latex   example chm
  stat.gnames                       text    html    latex   example chm
  swirl                             text    html    latex           chm
  write.list                        text    html    latex   example chm
  write.marray                      text    html    latex   example chm
  write.xls                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\marray.Rcheck\00_pkg_src\marray\chm\marray.chm


Compile time: 0 minutes, 1 second
69	Topics
700	Local links
37	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\marray.Rcheck\00_pkg_src\marray\chm\marray.chm, 110,271 bytes
Compression decreased file by 274,612 bytes.
  adding MD5 sums

* DONE (marray)