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Package 158/294HostnameOS / ArchBUILDCHECKBUILD BIN
macat 1.16.0
Joern Toedling
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/macat
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: macat
Version: 1.16.0
Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD check --no-vignettes macat_1.16.0.tar.gz
StartedAt: 2009-04-18 15:52:32 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 15:54:30 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 117.5 seconds
RetCode: 0
Status: OK
CheckDir: macat.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/macat.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'macat/DESCRIPTION' ... OK
* this is package 'macat' version '1.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'macat' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
myhtml: no visible global function definition for ‘getTDRows’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating macat-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating macat-manual.tex ... OK
* checking macat-manual.tex using pdflatex ... OK

macat.Rcheck/00install.out:

* Installing *source* package 'macat' ...
** R
** data
** demo
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
** help
 >>> Building/Updating help pages for package 'macat'
     Formats: text html latex example 
  buildMACAT                        text    html    latex   example
  compute_sliding                   text    html    latex   example
  discreteKernelize                 text    html    latex   example
  discretize                        text    html    latex
  discretizeAll                     text    html    latex   example
  discretize_tscores                text    html    latex   example
  evalScoring                       text    html    latex   example
  evaluateParameters                text    html    latex   example
  get_results                       text    html    latex   example
  html                              text    html    latex
  kernelize                         text    html    latex   example
  kernelizeAll                      text    html    latex   example
  kernelizeToPython                 text    html    latex   example
  kernels                           text    html    latex   example
  loaddatapkg                       text    html    latex   example
  macat-internal                    text    html    latex
  plot_MACATevalScoring             text    html    latex   example
  preprocessedLoader                text    html    latex   example
  pythondata                        text    html    latex   example
  scoring                           text    html    latex   example
  stjd                              text    html    latex   example
** building package indices ...
* DONE (macat)