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Package 159/294HostnameOS / ArchBUILDCHECKBUILD BIN
maCorrPlot 1.12.0
Alexander Ploner
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/maCorrPlot
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ WARNINGS ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  WARNINGS  OK 
Package: maCorrPlot
Version: 1.12.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes maCorrPlot_1.12.0.tar.gz
StartedAt: 2009-04-18 19:14:51 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 19:15:22 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 31.0 seconds
RetCode: 0
Status: WARNINGS
CheckDir: maCorrPlot.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/maCorrPlot.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'maCorrPlot/DESCRIPTION' ... OK
* this is package 'maCorrPlot' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'maCorrPlot' can be installed ... WARNING
Found the following significant warnings:
  WARNING: found \itemize inside \value in file 'CorrSample.Rd'
  WARNING: found \itemize inside \value in file 'CorrSample.Rd'
  WARNING: found \itemize inside \value in file 'CutCI.Rd'
  WARNING: found \itemize inside \value in file 'CutCI.Rd'
See 'E:/biocbld/bbs-2.3-bioc/meat/maCorrPlot.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.corr.sample':
  plot.corr.sample

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* creating maCorrPlot-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating maCorrPlot-manual.tex ... OK
* checking maCorrPlot-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  E:/biocbld/bbs-2.3-bioc/meat/maCorrPlot.Rcheck/00check.log
for details

maCorrPlot.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/maCorrPlot.Rcheck


---------- Making package maCorrPlot ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  preparing package maCorrPlot for lazy loading
Loading required package: lattice
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'maCorrPlot'
     Formats: text html latex example chm 
WARNING: found \itemize inside \value in file 'CorrSample.Rd'
WARNING: found \itemize inside \value in file 'CorrSample.Rd'
  CorrSample                        text    html    latex   example chm
WARNING: found \itemize inside \value in file 'CutCI.Rd'
WARNING: found \itemize inside \value in file 'CutCI.Rd'
  CutCI                             text    html    latex   example chm
  oligodata                         text    html    latex   example chm
  plot.corr.sample                  text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\maCorrPlot.Rcheck\00_pkg_src\maCorrPlot\chm\maCorrPlot.chm


Compile time: 0 minutes, 0 seconds
5	Topics
22	Local links
2	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\maCorrPlot.Rcheck\00_pkg_src\maCorrPlot\chm\maCorrPlot.chm, 27,695 bytes
Compression decreased file by 1,763 bytes.
  adding MD5 sums

* DONE (maCorrPlot)