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Package 119/294HostnameOS / ArchBUILDCHECKBUILD BIN
goProfiles 1.4.0
Alex Sanchez
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/goProfiles
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: goProfiles
Version: 1.4.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes goProfiles_1.4.0.tar.gz
StartedAt: 2009-04-18 18:58:45 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 19:00:02 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 76.8 seconds
RetCode: 0
Status: OK
CheckDir: goProfiles.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/goProfiles.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'goProfiles/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'goProfiles' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'goProfiles' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating goProfiles-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating goProfiles-manual.tex ... OK
* checking goProfiles-manual.tex using pdflatex ... OK

goProfiles.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/goProfiles.Rcheck


---------- Making package goProfiles ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package goProfiles for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: GO.db
Loading required package: DBI
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'goProfiles'
     Formats: text html latex example chm 
  CD4ids                            text    html    latex   example chm
  GOTermsList                       text    html    latex   example chm
  basicProfile                      text    html    latex   example chm
  compSummary                       text    html    latex   example chm
  compareGOProfiles                 text    html    latex   example chm
  compareGeneLists                  text    html    latex   example chm
  compareProfilesLists              text    html    latex   example chm
  conversionFunctions               text    html    latex   example chm
  drosophila                        text    html    latex   example chm
  equivSummary                      text    html    latex   example chm
  equivalentGOProfiles              text    html    latex   example chm
  expandedLevel                     text    html    latex   example chm
  expandedProfile                   text    html    latex   example chm
  fitGOProfile                      text    html    latex   example chm
  goProfiles-package                text    html    latex           chm
  hugoIds                           text    html    latex   example chm
  mergeProfilesLists                text    html    latex   example chm
  omimIds                           text    html    latex   example chm
  plotProfiles                      text    html    latex   example chm
  printProfiles                     text    html    latex   example chm
  prostateIds                       text    html    latex   example chm
  sampleProfiles                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\goProfiles.Rcheck\00_pkg_src\goProfiles\chm\goProfiles.chm


Compile time: 0 minutes, 0 seconds
23	Topics
82	Local links
1	Internet link
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\goProfiles.Rcheck\00_pkg_src\goProfiles\chm\goProfiles.chm, 55,933 bytes
Compression decreased file by 49,287 bytes.
  adding MD5 sums

* DONE (goProfiles)