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Package 35/294HostnameOS / ArchBUILDCHECKBUILD BIN
beadarraySNP 1.8.0
Jan Oosting
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/beadarraySNP
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386 [ OK ] OK  OK 
Package: beadarraySNP
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD build beadarraySNP
StartedAt: 2009-04-18 15:47:12 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 15:48:25 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 73.5 seconds
RetCode: 0
Status: OK
PackageFile: beadarraySNP_1.8.0.tar.gz
PackageFileSize: 571.1 KiB

Command output

* checking for file 'beadarraySNP/DESCRIPTION' ... OK
* preparing 'beadarraySNP':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'beadarraySNP' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: tools
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: quantsmooth
Loading required package: quantreg
Loading required package: SparseM
Package SparseM (0.79) loaded.  To cite, see citation("SparseM")

Attaching package: 'SparseM'


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 

Loading required package: lodplot
Loading required package: grid
** help
 >>> Building/Updating help pages for package 'beadarraySNP'
     Formats: text html latex example 
  BeadstudioQC                      text    html    latex
  CopynumberConversion              text    html    latex
  Datasets                          text    html    latex
  GenomicReports                    text    html    latex   example
  GetBeadStudioSampleNames          text    html    latex
  PolarTransforms                   text    html    latex   example
  QCIllumina-class                  text    html    latex
  Sample_Map2Samplesheet            text    html    latex
  alterCN                           text    html    latex
  arrayType                         text    html    latex
  backgroundCorrect.SNP             text    html    latex   example
  backgroundEstimate                text    html    latex
  calculateLOH                      text    html    latex
  calculateQCarray                  text    html    latex   example
  class.SnpSetIllumina              text    html    latex
  compareGenotypes                  text    html    latex   example
  createCNSummary                   text    html    latex
Note: removing empty section \examples in file 'dist.GT.Rd'
  dist.GT                           text    html    latex
  getDNAindex                       text    html    latex
  heterozygosity                    text    html    latex   example
  heterozygousSNPs                  text    html    latex   example
  interactiveCNselect               text    html    latex
  normalizeBetweenAlleles.SNP       text    html    latex   example
  normalizeBetweenSubsamples.SNP    text    html    latex   example
  normalizeLoci.SNP                 text    html    latex   example
  normalizeWithinArrays.SNP         text    html    latex   example
  pdfChromosomesSmoothCopyNumber    text    html    latex   example
  pdfQC                             text    html    latex
  plotGoldenGate4OPA                text    html    latex
  plotQC                            text    html    latex   example
  read.SnpSetIllumina               text    html    latex   example
  removeLowQualityProbes            text    html    latex
  removeLowQualitySamples           text    html    latex   example
  renameOPA                         text    html    latex
  reportGenotypeSegmentation        text    html    latex
  reportSamplePanelQC-methods       text    html    latex   example
  segmentate                        text    html    latex
  setRealCN                         text    html    latex
  smoothed.intensity                text    html    latex
  standardNormalization             text    html    latex   example
** building package indices ...
* DONE (beadarraySNP)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'beadarraySNP_1.8.0.tar.gz'