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Package 24/294HostnameOS / ArchBUILDCHECKBUILD BIN
annotationTools 1.12.0
Alexandre Kuhn
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/annotationTools
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: annotationTools
Version: 1.12.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes annotationTools_1.12.0.tar.gz
StartedAt: 2009-04-18 18:04:25 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 18:05:03 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 37.6 seconds
RetCode: 0
Status: OK
CheckDir: annotationTools.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/annotationTools.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'annotationTools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'annotationTools' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'annotationTools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating annotationTools-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating annotationTools-manual.tex ... OK
* checking annotationTools-manual.tex using pdflatex ... OK

annotationTools.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/annotationTools.Rcheck


---------- Making package annotationTools ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  preparing package annotationTools for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'annotationTools'
     Formats: text html latex example chm 
  HG-U133_Plus_2_annot_part         text    html    latex           chm
  HG-U133_Plus_2_ortholog_part      text    html    latex           chm
  Mouse430_2_annot_part             text    html    latex           chm
  annot_HGU133A                     text    html    latex           chm
Note: removing empty section \references in file 'compactList.Rd'
Note: removing empty section \references in file 'compactList.Rd'
  compactList                       text    html    latex   example chm
Note: removing empty section \references in file 'getANNOTATION.Rd'
Note: removing empty section \references in file 'getANNOTATION.Rd'
  getANNOTATION                     text    html    latex   example chm
Note: removing empty section \references in file 'getGENEID.Rd'
Note: removing empty section \references in file 'getGENEID.Rd'
  getGENEID                         text    html    latex   example chm
Note: removing empty section \references in file 'getGENEONTOLOGY.Rd'
Note: removing empty section \references in file 'getGENEONTOLOGY.Rd'
  getGENEONTOLOGY                   text    html    latex   example chm
Note: removing empty section \references in file 'getGENESYMBOL.Rd'
Note: removing empty section \references in file 'getGENESYMBOL.Rd'
  getGENESYMBOL                     text    html    latex   example chm
Note: removing empty section \references in file 'getGENETITLE.Rd'
Note: removing empty section \references in file 'getGENETITLE.Rd'
  getGENETITLE                      text    html    latex   example chm
Note: removing empty section \references in file 'getHOMOLOG.Rd'
Note: removing empty section \references in file 'getHOMOLOG.Rd'
  getHOMOLOG                        text    html    latex   example chm
Note: removing empty section \references in file 'getMULTIANNOTATION.Rd'
Note: removing empty section \references in file 'getMULTIANNOTATION.Rd'
  getMULTIANNOTATION                text    html    latex   example chm
Note: removing empty section \references in file 'getOrthologousProbesets.Rd'
Note: removing empty section \references in file 'getOrthologousProbesets.Rd'
  getOrthologousProbesets           text    html    latex   example chm
Note: removing empty section \references in file 'getPROBESET.Rd'
Note: removing empty section \references in file 'getPROBESET.Rd'
  getPROBESET                       text    html    latex   example chm
  homologene_part                   text    html    latex           chm
Note: removing empty section \references in file 'listToCharacterVector.Rd'
Note: removing empty section \references in file 'listToCharacterVector.Rd'
  listToCharacterVector             text    html    latex   example chm
  ortho                             text    html    latex           chm
Note: removing empty section \references in file 'ps2ps.Rd'
Note: removing empty section \references in file 'ps2ps.Rd'
  ps2ps                             text    html    latex   example chm
  table_human                       text    html    latex           chm
  table_mouse                       text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\annotationTools.Rcheck\00_pkg_src\annotationTools\chm\annotationTools.chm


Compile time: 0 minutes, 0 seconds
21	Topics
47	Local links
8	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\annotationTools.Rcheck\00_pkg_src\annotationTools\chm\annotationTools.chm, 39,012 bytes
Compression decreased file by 37,651 bytes.
  adding MD5 sums

* DONE (annotationTools)