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Package 10/294HostnameOS / ArchBUILDCHECKBUILD BIN
affycoretools 1.14.1
James W. MacDonald
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/affycoretools
Last Changed Rev: 36977 / Revision: 38965
Last Changed Date: 2009-01-27 09:15:41 -0800 (Tue, 27 Jan 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: affycoretools
Version: 1.14.1
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD build affycoretools
StartedAt: 2009-04-18 16:47:22 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 16:50:02 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 159.3 seconds
RetCode: 0
Status: OK
PackageFile: affycoretools_1.14.1.tar.gz
PackageFileSize: 6.505 MiB

Command output

* checking for file 'affycoretools/DESCRIPTION' ... OK
* preparing 'affycoretools':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.3-bioc/tmpdir/Rinst484864840


---------- Making package affycoretools ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  preparing package affycoretools for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: limma
Loading required package: GOstats
Loading required package: graph
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: annotate
Loading required package: xtable
Loading required package: RBGL
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: biomaRt

Attaching package: 'biomaRt'


	The following object(s) are masked from package:annotate :

	 getGO 

Loading required package: gcrma
Loading required package: matchprobes
Loading required package: annaffy
Loading required package: KEGG.db
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'affycoretools'
     Formats: text html latex example chm 
  affystart                         text    html    latex           chm
  annBM                             text    html    latex   example chm
  convert.back                      text    html    latex           chm
  extractStats                      text    html    latex           chm
  foldFilt                          text    html    latex           chm
  foldFiltBM                        text    html    latex           chm
  getCols                           text    html    latex           chm
  getIndex                          text    html    latex           chm
  getOrder                          text    html    latex           chm
  getUniqueLL                       text    html    latex           chm
  getans                            text    html    latex           chm
  houtSig                           text    html    latex           chm
  hyperG2annaffy                    text    html    latex           chm
  hyperGoutput                      text    html    latex           chm
  intNames                          text    html    latex           chm
  limma2annaffy                     text    html    latex           chm
  limma2biomaRt                     text    html    latex           chm
  make.cl                           text    html    latex           chm
  makeFCList                        text    html    latex           chm
  makeIndices                       text    html    latex           chm
  pca.legend                        text    html    latex           chm
  plotDeg                           text    html    latex   example chm
  plotMA                            text    html    latex           chm
  plotPCA                           text    html    latex           chm
  probes2table                      text    html    latex           chm
  probes2tableBM                    text    html    latex           chm
  tableFilt                         text    html    latex           chm
  vennCounts2                       text    html    latex   example chm
  vennSelect                        text    html    latex           chm
  vennSelectBM                      text    html    latex           chm
  vennSelectFC                      text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.3-bioc\meat\affycoretools\chm\affycoretools.chm





Compile time: 0 minutes, 27 seconds

32	Topics

52	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.3-bioc\meat\affycoretools\chm\affycoretools.chm, 62,548 bytes

Compression decreased file by 78,925 bytes.

  adding MD5 sums

* DONE (affycoretools)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'affycoretools_1.14.1.tar.gz'